Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | tacAT/ElaA-DUF1778 |
| Location | 75780..76519 | Replicon | plasmid pJBIWA001_4 |
| Accession | NZ_CP074186 | ||
| Organism | Raoultella planticola strain JBIWA001 | ||
Toxin (Protein)
| Gene name | tacT | Uniprot ID | - |
| Locus tag | KGP19_RS29375 | Protein ID | WP_076752153.1 |
| Coordinates | 75780..76265 (-) | Length | 162 a.a. |
Antitoxin (Protein)
| Gene name | tacA | Uniprot ID | A0A5E1AWX8 |
| Locus tag | KGP19_RS29380 | Protein ID | WP_012540086.1 |
| Coordinates | 76253..76519 (-) | Length | 89 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP19_RS29330 (KGP19_29200) | 70784..71260 | + | 477 | WP_076752132.1 | transglycosylase SLT domain-containing protein | - |
| KGP19_RS29335 (KGP19_29205) | 71298..71828 | - | 531 | WP_076752134.1 | antirestriction protein | - |
| KGP19_RS29340 (KGP19_29210) | 72020..72250 | + | 231 | WP_076752135.1 | hypothetical protein | - |
| KGP19_RS29345 (KGP19_29215) | 72454..73287 | - | 834 | WP_076752137.1 | N-6 DNA methylase | - |
| KGP19_RS29350 (KGP19_29220) | 73334..73564 | - | 231 | WP_076752138.1 | hypothetical protein | - |
| KGP19_RS29355 (KGP19_29225) | 73653..74000 | - | 348 | WP_076752140.1 | hypothetical protein | - |
| KGP19_RS29360 (KGP19_29230) | 74103..74375 | - | 273 | WP_137055850.1 | hypothetical protein | - |
| KGP19_RS29365 (KGP19_29235) | 75280..75399 | - | 120 | WP_223156217.1 | type I toxin-antitoxin system Hok family toxin | - |
| KGP19_RS29370 | 75344..75496 | - | 153 | WP_223526259.1 | DUF5431 family protein | - |
| KGP19_RS29375 (KGP19_29240) | 75780..76265 | - | 486 | WP_076752153.1 | GNAT family N-acetyltransferase | Toxin |
| KGP19_RS29380 (KGP19_29245) | 76253..76519 | - | 267 | WP_012540086.1 | DUF1778 domain-containing protein | Antitoxin |
| KGP19_RS29385 (KGP19_29250) | 76820..77143 | + | 324 | WP_013087171.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| KGP19_RS29390 (KGP19_29255) | 77145..77744 | + | 600 | Protein_93 | arsenical resistance protein ArsH | - |
| KGP19_RS29400 (KGP19_29265) | 78980..79090 | + | 111 | Protein_95 | arsenical resistance protein ArsH | - |
| KGP19_RS29405 (KGP19_29270) | 79099..79644 | + | 546 | WP_047365773.1 | sigma-70 family RNA polymerase sigma factor | - |
| KGP19_RS29410 (KGP19_29275) | 79720..80082 | + | 363 | WP_013087168.1 | arsenic metallochaperone ArsD family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | aac(6')-Ib-cr / ARR-3 / dfrA27 / aadA16 / qacE / sul1 / qnrB91 / mph(A) | - | 1..102491 | 102491 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 162 a.a. Molecular weight: 17838.68 Da Isoelectric Point: 10.0748
>T201799 WP_076752153.1 NZ_CP074186:c76265-75780 [Raoultella planticola]
VGRVTVPEPLSSFHQVAEFVCGETVLDDWLKQKGLKNQALGSARTFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNM
PDPIPVIILARLAVDLSFRGKGLGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKPSRTQQRTLFLKLP
Q
VGRVTVPEPLSSFHQVAEFVCGETVLDDWLKQKGLKNQALGSARTFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNM
PDPIPVIILARLAVDLSFRGKGLGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKPSRTQQRTLFLKLP
Q
Download Length: 486 bp
>T201799 NZ_CP098769:4092649-4092867 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 10076.47 Da Isoelectric Point: 4.3721
>AT201799 WP_012540086.1 NZ_CP074186:c76519-76253 [Raoultella planticola]
MKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILEMACQAAENVILDRRVFNFNDEQYAEFIDMLDAPVADDPAIDKLL
ARKPQWDV
MKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILEMACQAAENVILDRRVFNFNDEQYAEFIDMLDAPVADDPAIDKLL
ARKPQWDV
Download Length: 267 bp
>AT201799 NZ_CP098769:4092248-4092622 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|