Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2058246..2058412 | Replicon | chromosome |
| Accession | NZ_CP074182 | ||
| Organism | Raoultella planticola strain JBIWA001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2058304..2058407 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2058246..2058412 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP19_RS09815 (KGP19_09790) | 2053384..2055444 | + | 2061 | WP_094898091.1 | oligopeptidase B | - |
| KGP19_RS09820 (KGP19_09795) | 2055450..2056109 | - | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| KGP19_RS09825 (KGP19_09800) | 2056188..2056418 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| KGP19_RS09830 (KGP19_09805) | 2056545..2056919 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| KGP19_RS09835 (KGP19_09810) | 2056923..2057792 | + | 870 | WP_032686939.1 | copper homeostasis membrane protein CopD | - |
| KGP19_RS09840 (KGP19_09815) | 2057809..2058147 | + | 339 | WP_064793224.1 | YebY family protein | - |
| - | 2058246..2058412 | - | 167 | - | - | Antitoxin |
| - | 2058304..2058407 | + | 104 | - | - | Toxin |
| KGP19_RS09845 (KGP19_09820) | 2058727..2058870 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| KGP19_RS09850 (KGP19_09825) | 2058991..2059962 | - | 972 | WP_179275582.1 | VirK/YbjX family protein | - |
| KGP19_RS09855 (KGP19_09830) | 2060105..2060749 | + | 645 | WP_049267869.1 | protein-serine/threonine phosphatase | - |
| KGP19_RS09860 (KGP19_09835) | 2060755..2060946 | - | 192 | WP_064793225.1 | YebW family protein | - |
| KGP19_RS09865 (KGP19_09840) | 2061040..2061279 | - | 240 | WP_004863958.1 | YebV family protein | - |
| KGP19_RS09870 (KGP19_09845) | 2061394..2062827 | - | 1434 | WP_064793226.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201785 NZ_CP074182:2058304-2058407 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT201785 NZ_CP074182:c2058412-2058246 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
