Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4038336..4038487 | Replicon | chromosome |
| Accession | NZ_CP074177 | ||
| Organism | Enterobacter asburiae strain JBIWA002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4038349..4038452 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4038336..4038487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP20_RS19845 (KGP20_19760) | 4034603..4036051 | + | 1449 | WP_223604346.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KGP20_RS19850 (KGP20_19765) | 4036158..4036397 | + | 240 | WP_008500472.1 | YebV family protein | - |
| KGP20_RS19855 (KGP20_19770) | 4036432..4037076 | - | 645 | WP_047173214.1 | protein-serine/threonine phosphatase | - |
| KGP20_RS19860 (KGP20_19775) | 4037242..4038183 | + | 942 | WP_223604347.1 | VirK/YbjX family protein | - |
| - | 4038336..4038487 | + | 152 | - | - | Antitoxin |
| - | 4038349..4038452 | - | 104 | - | - | Toxin |
| KGP20_RS19865 (KGP20_19780) | 4038591..4038929 | - | 339 | WP_045404471.1 | YebY family protein | - |
| KGP20_RS19870 (KGP20_19785) | 4038946..4039815 | - | 870 | WP_045404469.1 | copper homeostasis membrane protein CopD | - |
| KGP20_RS19875 (KGP20_19790) | 4039817..4040188 | - | 372 | WP_045355979.1 | CopC domain-containing protein YobA | - |
| KGP20_RS19880 (KGP20_19795) | 4040325..4040555 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| KGP20_RS19885 (KGP20_19800) | 4040666..4041317 | + | 652 | Protein_3812 | carbon-nitrogen hydrolase family protein | - |
| KGP20_RS19890 (KGP20_19805) | 4041342..4042004 | + | 663 | WP_045355977.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201769 NZ_CP074177:c4038452-4038349 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT201769 NZ_CP074177:4038336-4038487 [Enterobacter asburiae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
