Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2964860..2965003 | Replicon | chromosome |
| Accession | NZ_CP074170 | ||
| Organism | Enterobacter sp. JBIWA003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2964865..2964968 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2964860..2965003 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP25_RS14240 (KGP25_14195) | 2960034..2960297 | - | 264 | WP_223539169.1 | hypothetical protein | - |
| KGP25_RS14245 (KGP25_14200) | 2960287..2960868 | - | 582 | WP_223539170.1 | adhesin | - |
| KGP25_RS14250 (KGP25_14205) | 2960853..2961587 | - | 735 | WP_223539171.1 | protein-serine/threonine phosphatase | - |
| KGP25_RS14255 (KGP25_14210) | 2961754..2962695 | + | 942 | WP_223539172.1 | VirK/YbjX family protein | - |
| KGP25_RS14260 (KGP25_14215) | 2962772..2963092 | - | 321 | WP_223539173.1 | hypothetical protein | - |
| KGP25_RS14265 (KGP25_14220) | 2963093..2963347 | - | 255 | WP_223539174.1 | hypothetical protein | - |
| KGP25_RS14270 (KGP25_14225) | 2963529..2963888 | + | 360 | WP_048223729.1 | hypothetical protein | - |
| KGP25_RS14275 (KGP25_14230) | 2963890..2964342 | + | 453 | WP_045908220.1 | DUF3828 domain-containing protein | - |
| KGP25_RS14280 | 2964414..2964731 | + | 318 | Protein_2793 | integrase | - |
| - | 2964860..2965003 | + | 144 | - | - | Antitoxin |
| - | 2964865..2964968 | - | 104 | - | - | Toxin |
| KGP25_RS14285 (KGP25_14235) | 2965108..2965446 | - | 339 | WP_048029434.1 | YebY family protein | - |
| KGP25_RS14290 (KGP25_14240) | 2965463..2966332 | - | 870 | WP_223539175.1 | copper homeostasis membrane protein CopD | - |
| KGP25_RS14295 (KGP25_14245) | 2966334..2966705 | - | 372 | WP_048029432.1 | CopC domain-containing protein YobA | - |
| KGP25_RS14300 (KGP25_14250) | 2966843..2967073 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| KGP25_RS14305 (KGP25_14255) | 2967184..2967834 | + | 651 | WP_223539176.1 | carbon-nitrogen hydrolase family protein | - |
| KGP25_RS14310 (KGP25_14260) | 2967859..2968521 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201739 NZ_CP074170:c2964968-2964865 [Enterobacter sp. JBIWA003]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT201739 NZ_CP074170:2964860-2965003 [Enterobacter sp. JBIWA003]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
