Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2753182..2753326 | Replicon | chromosome |
| Accession | NZ_CP074159 | ||
| Organism | Enterobacter sp. JBIWA005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2753188..2753291 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2753182..2753326 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP22_RS12980 (KGP22_12935) | 2748338..2749786 | + | 1449 | WP_223579377.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KGP22_RS12985 (KGP22_12940) | 2749894..2750133 | + | 240 | WP_008500472.1 | YebV family protein | - |
| KGP22_RS12990 (KGP22_12945) | 2750168..2750812 | - | 645 | WP_223579379.1 | protein-serine/threonine phosphatase | - |
| KGP22_RS12995 (KGP22_12950) | 2750979..2751920 | + | 942 | WP_223579382.1 | VirK/YbjX family protein | - |
| KGP22_RS13000 (KGP22_12955) | 2752093..2752989 | + | 897 | WP_223579385.1 | benzoate transporter | - |
| - | 2753182..2753326 | + | 145 | - | - | Antitoxin |
| - | 2753188..2753291 | - | 104 | - | - | Toxin |
| KGP22_RS13005 (KGP22_12960) | 2753430..2753768 | - | 339 | WP_223579388.1 | YebY family protein | - |
| KGP22_RS13010 (KGP22_12965) | 2753785..2754654 | - | 870 | WP_223579391.1 | copper homeostasis membrane protein CopD | - |
| KGP22_RS13015 (KGP22_12970) | 2754656..2755027 | - | 372 | WP_111964809.1 | CopC domain-containing protein YobA | - |
| KGP22_RS13020 (KGP22_12975) | 2755165..2755395 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| KGP22_RS13025 (KGP22_12980) | 2755506..2756156 | + | 651 | WP_223579394.1 | carbon-nitrogen hydrolase family protein | - |
| KGP22_RS13030 (KGP22_12985) | 2756181..2756843 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201696 NZ_CP074159:c2753291-2753188 [Enterobacter sp. JBIWA005]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT201696 NZ_CP074159:2753182-2753326 [Enterobacter sp. JBIWA005]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
