Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821155..1821298 | Replicon | chromosome |
| Accession | NZ_CP074154 | ||
| Organism | Enterobacter asburiae strain JBIWA007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821190..1821293 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821155..1821298 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP18_RS08790 (KGP18_08795) | 1817639..1818301 | - | 663 | WP_223537004.1 | exodeoxyribonuclease X | - |
| KGP18_RS08795 (KGP18_08800) | 1818326..1818976 | - | 651 | WP_223537006.1 | carbon-nitrogen hydrolase family protein | - |
| KGP18_RS08800 (KGP18_08805) | 1819087..1819317 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| KGP18_RS08805 (KGP18_08810) | 1819454..1819825 | + | 372 | WP_223537009.1 | CopC domain-containing protein YobA | - |
| KGP18_RS08810 (KGP18_08815) | 1819827..1820696 | + | 870 | WP_063439340.1 | copper homeostasis membrane protein CopD | - |
| KGP18_RS08815 (KGP18_08820) | 1820713..1821051 | + | 339 | WP_045404471.1 | YebY family protein | - |
| - | 1821155..1821298 | - | 144 | - | - | Antitoxin |
| - | 1821190..1821293 | + | 104 | - | - | Toxin |
| KGP18_RS08820 (KGP18_08825) | 1821478..1822536 | - | 1059 | WP_223537011.1 | ParA family protein | - |
| KGP18_RS08825 (KGP18_08830) | 1822656..1823732 | - | 1077 | WP_223537013.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| KGP18_RS08830 (KGP18_08835) | 1823710..1823961 | - | 252 | WP_083581992.1 | excisionase | - |
| KGP18_RS08835 (KGP18_08840) | 1824220..1824522 | - | 303 | WP_223537016.1 | hypothetical protein | - |
| KGP18_RS08840 (KGP18_08845) | 1824736..1825272 | - | 537 | WP_223537019.1 | phage N-6-adenine-methyltransferase | - |
| KGP18_RS08845 (KGP18_08850) | 1825265..1825972 | - | 708 | WP_223537022.1 | polymer-forming cytoskeletal protein | - |
| KGP18_RS08850 (KGP18_08855) | 1825984..1826205 | - | 222 | WP_223537025.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1814849..1858955 | 44106 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201682 NZ_CP074154:1821190-1821293 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT201682 NZ_CP074154:c1821298-1821155 [Enterobacter asburiae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
