Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3326250..3326347 | Replicon | chromosome |
| Accession | NZ_CP074137 | ||
| Organism | Serratia sp. JSRIV006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3326252..3326347 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3326250..3326338 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGP16_RS15380 (KGP16_15330) | 3323035..3323376 | - | 342 | WP_223497842.1 | hypothetical protein | - |
| KGP16_RS15385 (KGP16_15335) | 3323516..3323770 | - | 255 | WP_223499651.1 | DUF1799 domain-containing protein | - |
| KGP16_RS15390 (KGP16_15340) | 3323818..3324164 | - | 347 | Protein_3009 | phage tail assembly chaperone | - |
| KGP16_RS15395 (KGP16_15345) | 3324209..3324865 | - | 657 | WP_223497844.1 | phage tail protein | - |
| KGP16_RS15400 (KGP16_15350) | 3324972..3325562 | + | 591 | WP_223497845.1 | DUF5710 domain-containing protein | - |
| KGP16_RS15405 (KGP16_15360) | 3325698..3326162 | + | 465 | Protein_3012 | tyrosine-type recombinase/integrase | - |
| - | 3326250..3326338 | + | 89 | - | - | Antitoxin |
| - | 3326252..3326347 | - | 96 | - | - | Toxin |
| KGP16_RS15410 (KGP16_15365) | 3326488..3326829 | - | 342 | WP_071683295.1 | YebY family protein | - |
| KGP16_RS15415 (KGP16_15370) | 3326899..3327780 | - | 882 | WP_223497905.1 | copper homeostasis membrane protein CopD | - |
| KGP16_RS15420 (KGP16_15375) | 3327784..3328167 | - | 384 | WP_223497906.1 | CopC domain-containing protein YobA | - |
| KGP16_RS15425 (KGP16_15380) | 3328491..3329009 | - | 519 | WP_021806759.1 | non-heme ferritin | - |
| KGP16_RS15430 (KGP16_15385) | 3329396..3329626 | + | 231 | WP_209526777.1 | DNA polymerase III subunit theta | - |
| KGP16_RS15435 (KGP16_15390) | 3329952..3330941 | - | 990 | WP_121607109.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | chuW / chuY | 3269289..3339687 | 70398 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 bp
>T201557 NZ_CP074137:c3326347-3326252 [Serratia sp. JSRIV006]
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
AACAAACCTTGCATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCCTTTCCCTAGACCGAGTATAGGAATCG
TACTCGGTCTTTTTTT
Antitoxin
Download Length: 89 bp
>AT201557 NZ_CP074137:3326250-3326338 [Serratia sp. JSRIV006]
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
ATAAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAAGGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTATGCA
