201387

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 20096..20621 Replicon plasmid pSLT
Accession NZ_CP074093
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain SO_8752_Stm

Toxin (Protein)


Gene name ccdB Uniprot ID I3W3D5
Locus tag KFK83_RS23590 Protein ID WP_001159863.1
Coordinates 20316..20621 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID M7S5D0
Locus tag KFK83_RS23585 Protein ID WP_000813641.1
Coordinates 20096..20314 (+) Length 73 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFK83_RS23560 (KFK83_23560) 15383..15764 + 382 Protein_20 YgiW/YdeI family stress tolerance OB fold protein -
KFK83_RS23565 (KFK83_23565) 15933..16377 + 445 Protein_21 tyrosine-type recombinase/integrase -
KFK83_RS23570 (KFK83_23570) 16636..17625 - 990 WP_001527061.1 RepB family plasmid replication initiator protein -
KFK83_RS23575 (KFK83_23575) 18119..18415 - 297 WP_001687482.1 hypothetical protein -
KFK83_RS24205 18427..18855 + 429 Protein_24 hypothetical protein -
KFK83_RS23580 (KFK83_23580) 18899..19420 - 522 WP_010999942.1 hypothetical protein -
KFK83_RS23585 (KFK83_23585) 20096..20314 + 219 WP_000813641.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
KFK83_RS23590 (KFK83_23590) 20316..20621 + 306 WP_001159863.1 type II toxin-antitoxin system toxin CcdB Toxin
KFK83_RS23595 (KFK83_23595) 20623..20913 + 291 WP_001266176.1 hypothetical protein -
KFK83_RS23600 (KFK83_23600) 20910..21431 + 522 WP_000198608.1 hypothetical protein -
KFK83_RS23605 (KFK83_23605) 21466..22248 + 783 WP_000082169.1 site-specific integrase -
KFK83_RS23610 (KFK83_23610) 22257..22808 + 552 WP_000545754.1 EAL domain-containing protein -
KFK83_RS23615 (KFK83_23615) 22995..23483 + 489 WP_001075507.1 CaiF/GrlA family transcriptional regulator -
KFK83_RS23620 (KFK83_23620) 23477..23962 + 486 WP_000905606.1 membrane protein -
KFK83_RS23625 (KFK83_23625) 24239..24526 - 288 WP_071530243.1 hypothetical protein -
KFK83_RS23630 (KFK83_23630) 24682..25242 + 561 WP_000900095.1 inverse autotransporter beta domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid - rck / pefD / pefC / pefA / pefB / fdeC / spvC / spvB 1..93933 93933
- flank IS/Tn - - 25309..25659 350


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-100)

Antitoxin

(2-72)


Sequences


Toxin        


Download         Length: 102 a.a.        Molecular weight: 11587.48 Da        Isoelectric Point: 6.9787

>T201387 WP_001159863.1 NZ_CP074093:20316-20621 [Salmonella enterica subsp. enterica serovar Typhimurium]
MQFKVYTCKRESRYRLFVDVQSDIIDTPGRRMAVPLVSARLLSEKVPRDLYPVMHIGDEPYRLLTTDMTSVPATVIGEEV
ADLSLRENDIKNAINLMFRGI

Download         Length: 306 bp

>T201387 NZ_CP098350:814939-815349 [Klebsiella pneumoniae]
GTGGTCCTGTGGCAATCTGATCTCCGTATCTCCTGGCGCGCGCAGTGGTTTTCCCTGCTGCTTCACGGCGTGGTGGCGGC
CCTGGTGCTGTTGGTTCCCTGGCCGCTGAGCTATACCCCGATCTGGCTGCTGCTGCTGTCGCTGGTGGTCTTCGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCCCGTCGCGGGGAGATAAAACTGCTCACCGATTCCCGTCTTCGCTGGCAAAACGCC
GAATGGGAAATCCTCGGGACGCCGTGGGTTATCAATAGCGGTATGCTGCTGCGTTTGCGCCATGTCGATACCCGGCGCGG
ACAGCATCTTTGGCTGGCGGCGGACAGCATGGACGCCGGAGAGTGGCGCGATCTGCGCCGGCTGGTGCTGCAAAAACCGG
CGCAGGAGTAA

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8314.16 Da        Isoelectric Point: 4.5203

>AT201387 WP_000813641.1 NZ_CP074093:20096-20314 [Salmonella enterica subsp. enterica serovar Typhimurium]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWQEENREGMAEVASFIEANGSFADDNRNW

Download         Length: 219 bp

>AT201387 NZ_CP098350:814692-814958 [Klebsiella pneumoniae]
ATGGACATTAACAATAAAGCACGTATCCACTGGGCATGCCGCCGCGGGATGCGCGAACTCGACATCTCCATCATGCCGTT
CTTTGAGTATGAGTACGATACCCTCAGCGACGCTGACAAACAGCTGTTCATTCGCCTGCTGGAAAATGACGATCCGGATC
TGTTCAACTGGCTGATGAACCACGGCAAACCGGCCGATGCGGAGCTGCAGCGGATGGTAACCTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB I3W3D5


Antitoxin

Source ID Structure
AlphaFold DB A0A656ICA6

References