201380

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 3727948..3728534 Replicon chromosome
Accession NZ_CP074092
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain SO_8752_Stm

Toxin (Protein)


Gene name doc Uniprot ID E8XF70
Locus tag KFK83_RS18200 Protein ID WP_001521773.1
Coordinates 3727948..3728316 (-) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID M7SDJ3
Locus tag KFK83_RS18205 Protein ID WP_001520924.1
Coordinates 3728313..3728534 (-) Length 74 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFK83_RS18180 (3723508) 3723508..3724578 - 1071 WP_000907838.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
KFK83_RS18185 (3724580) 3724580..3725425 - 846 WP_000572196.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
KFK83_RS18190 (3725422) 3725422..3726309 - 888 WP_000099303.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
KFK83_RS18195 (3726373) 3726373..3727689 - 1317 WP_000624747.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
KFK83_RS18200 (3727948) 3727948..3728316 - 369 WP_001521773.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
KFK83_RS18205 (3728313) 3728313..3728534 - 222 WP_001520924.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
KFK83_RS18210 (3728666) 3728666..3729379 - 714 WP_000416114.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
KFK83_RS18215 (3729381) 3729381..3730148 - 768 WP_000082083.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
KFK83_RS18220 (3730145) 3730145..3731422 - 1278 WP_000803766.1 branched chain amino acid ABC transporter permease LivM -
KFK83_RS18225 (3731419) 3731419..3732345 - 927 WP_000003007.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
KFK83_RS18230 (3732405) 3732405..3733514 - 1110 WP_000822976.1 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 3722771..3738755 15984


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(24-86)

Antitoxin

(1-49)


Sequences


Toxin        


Download         Length: 123 a.a.        Molecular weight: 13587.92 Da        Isoelectric Point: 7.3190

>T201380 WP_001521773.1 NZ_CP074092:c3728316-3727948 [Salmonella enterica subsp. enterica serovar Typhimurium]
MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLKQIEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGISLAANPDFVDMTVDAAAGRLTLEQIAVRLRA

Download         Length: 369 bp

>T201380 NZ_CP074092:c3728316-3727948 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGACCCTACAACTTATCTCAGCGGAAGAGATAATTCAGTTTCACGACAGGCTTCTCCGCGTTACGCCTGGTGTAACAGG
CATGCCTGATCCTGGCCGCGCGGAAGCGCTAATGTACCGGGTACTCAAGCAAATCGAATATGAAGGGGTGACCGACGTGT
GGCTGCTGGCGGCAATGCATTTGCTCGCTATATCCCGTGGGCATATCTTCAATGATGGTAACAAACGTACCGCCTTATTT
ATTACGCTGCTGTTTTTAAAGCGTAACGGGATCTCACTCGCTGCGAATCCGGATTTTGTCGATATGACAGTCGATGCGGC
GGCAGGGCGGCTTACGCTGGAGCAAATTGCCGTTCGCTTACGTGCCTGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8152.14 Da        Isoelectric Point: 5.0775

>AT201380 WP_001520924.1 NZ_CP074092:c3728534-3728313 [Salmonella enterica subsp. enterica serovar Typhimurium]
MRTVNYSEARQNLAEVLESAVTGGPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGNELRELADK

Download         Length: 222 bp

>AT201380 NZ_CP074092:c3728534-3728313 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGCGTACGGTTAACTATAGCGAAGCGCGGCAAAATCTGGCCGAAGTCCTGGAAAGTGCGGTGACGGGGGGGCCTGTTAC
CATCACGCGTCGTGGGCATAAGTCCGCAGTGATCATCAGCGCCGAGGAGTTTGAGCGTTATCAGACGGCGCGAATGGATG
ATGAGTTTGCTGCCATTATGGCGGTTCATGGCAATGAGCTCAGGGAGCTGGCGGATAAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A607IPC3


Antitoxin

Source ID Structure
AlphaFold DB A0A6C6Z871

References