Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977643..1977788 | Replicon | chromosome |
| Accession | NZ_CP074087 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain MRSN752165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977679..1977781 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977643..1977788 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KF579_RS09520 | 1972773..1974833 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KF579_RS09525 | 1974837..1975496 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KF579_RS09530 | 1975575..1975805 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KF579_RS09535 | 1975918..1976292 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| KF579_RS09540 | 1976296..1977165 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KF579_RS09545 | 1977182..1977520 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1977643..1977788 | - | 146 | - | - | Antitoxin |
| - | 1977679..1977781 | + | 103 | - | - | Toxin |
| KF579_RS09550 | 1978157..1978300 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| KF579_RS09555 | 1978405..1979373 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KF579_RS09560 | 1979530..1980183 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| KF579_RS09565 | 1980180..1980371 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KF579_RS09570 | 1980469..1980708 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KF579_RS09575 | 1980824..1982257 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T201345 NZ_CP074087:1977679-1977781 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT201345 NZ_CP074087:c1977788-1977643 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
