Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2179218..2179489 | Replicon | chromosome |
| Accession | NZ_CP074052 | ||
| Organism | Escherichia coli strain PD23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2179348..2179451 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2179218..2179489 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU85_RS10460 | 2175773..2176435 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU85_RS10465 | 2176459..2177115 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU85_RS10470 | 2177217..2177447 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| KFU85_RS10475 | 2177586..2177960 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| KFU85_RS10480 | 2177964..2178836 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| KFU85_RS10485 | 2178849..2179190 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2179218..2179489 | - | 272 | - | - | Antitoxin |
| - | 2179348..2179451 | + | 104 | - | - | Toxin |
| KFU85_RS10490 | 2179586..2180242 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| KFU85_RS10495 | 2180243..2180434 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU85_RS10500 | 2180539..2180775 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU85_RS10505 | 2180893..2182332 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201313 NZ_CP074052:2179348-2179451 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201313 NZ_CP074052:c2179489-2179218 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
