Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relE-yefM/YoeB-YefM |
| Location | 2085826..2086211 | Replicon | chromosome |
| Accession | NC_000911 | ||
| Organism | Synechocystis sp. PCC 6803 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | SGL_RS18935 | Protein ID | WP_080504056.1 |
| Coordinates | 2086107..2086211 (+) | Length | 35 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | SGL_RS11730 | Protein ID | WP_010873096.1 |
| Coordinates | 2085826..2086110 (+) | Length | 95 a.a. |
Genomic Context
Location: 2080885..2082720 (1836 bp)
Type: Others
Protein ID: WP_010873091.1
Type: Others
Protein ID: WP_010873091.1
Location: 2084143..2084370 (228 bp)
Type: Others
Protein ID: WP_020862282.1
Type: Others
Protein ID: WP_020862282.1
Location: 2084416..2084760 (345 bp)
Type: Others
Protein ID: WP_071822655.1
Type: Others
Protein ID: WP_071822655.1
Location: 2084922..2085206 (285 bp)
Type: Others
Protein ID: WP_014407120.1
Type: Others
Protein ID: WP_014407120.1
Location: 2085211..2085417 (207 bp)
Type: Others
Protein ID: WP_010873094.1
Type: Others
Protein ID: WP_010873094.1
Location: 2085445..2085684 (240 bp)
Type: Others
Protein ID: WP_010873095.1
Type: Others
Protein ID: WP_010873095.1
Location: 2085826..2086110 (285 bp)
Type: Antitoxin
Protein ID: WP_010873096.1
Type: Antitoxin
Protein ID: WP_010873096.1
Location: 2086107..2086211 (105 bp)
Type: Toxin
Protein ID: WP_080504056.1
Type: Toxin
Protein ID: WP_080504056.1
Location: 2087356..2087733 (378 bp)
Type: Others
Protein ID: WP_010873098.1
Type: Others
Protein ID: WP_010873098.1
Location: 2088680..2090023 (1344 bp)
Type: Others
Protein ID: WP_010873100.1
Type: Others
Protein ID: WP_010873100.1
Location: 2082864..2083916 (1053 bp)
Type: Others
Protein ID: WP_010873092.1
Type: Others
Protein ID: WP_010873092.1
Location: 2086305..2087129 (825 bp)
Type: Others
Protein ID: WP_010873097.1
Type: Others
Protein ID: WP_010873097.1
Location: 2088130..2088492 (363 bp)
Type: Others
Protein ID: WP_010873099.1
Type: Others
Protein ID: WP_010873099.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGL_RS11695 (slr0442) | 2080885..2082720 | + | 1836 | WP_010873091.1 | hypothetical protein | - |
| SGL_RS11700 (sll0428) | 2082864..2083916 | - | 1053 | WP_010873092.1 | 2OG-Fe(II) oxygenase | - |
| SGL_RS11705 | 2084143..2084370 | + | 228 | WP_020862282.1 | DUF2281 domain-containing protein | - |
| SGL_RS18930 | 2084416..2084760 | + | 345 | WP_071822655.1 | type II toxin-antitoxin system VapC family toxin | - |
| SGL_RS11715 | 2084922..2085206 | + | 285 | WP_014407120.1 | BrnT family toxin | - |
| SGL_RS11720 (slr1005) | 2085211..2085417 | + | 207 | WP_010873094.1 | hypothetical protein | - |
| SGL_RS11725 (ssr0759) | 2085445..2085684 | + | 240 | WP_010873095.1 | hypothetical protein | - |
| SGL_RS11730 (ssr0761) | 2085826..2086110 | + | 285 | WP_010873096.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| SGL_RS18935 | 2086107..2086211 | + | 105 | WP_080504056.1 | type II toxin-antitoxin system YoeB family toxin | Toxin |
| SGL_RS11735 (sll0427) | 2086305..2087129 | - | 825 | WP_010873097.1 | photosystem II manganese-stabilizing polypeptide | - |
| SGL_RS11740 (slr0443) | 2087356..2087733 | + | 378 | WP_010873098.1 | hypothetical protein | - |
| SGL_RS11750 (sll0426) | 2088130..2088492 | - | 363 | WP_010873099.1 | hypothetical protein | - |
| SGL_RS11755 (slr0444) | 2088680..2090023 | + | 1344 | WP_010873100.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 35 a.a. Molecular weight: 4196.90 Da Isoelectric Point: 8.5633
>T20126 WP_080504056.1 NC_000911:2086107-2086211 [Synechocystis sp. PCC 6803]
VKLIFSEQAWSDYLYWQQNDKKILKRINTLVELI
VKLIFSEQAWSDYLYWQQNDKKILKRINTLVELI
Download Length: 105 bp
>T20126 NC_000911:2086107-2086211 [Synechocystis sp. PCC 6803]
GTGAAGCTAATTTTCTCTGAGCAAGCCTGGAGCGATTATCTTTACTGGCAACAAAACGACAAGAAAATACTTAAAAGAAT
CAATACCTTAGTTGAATTAATTTGA
GTGAAGCTAATTTTCTCTGAGCAAGCCTGGAGCGATTATCTTTACTGGCAACAAAACGACAAGAAAATACTTAAAAGAAT
CAATACCTTAGTTGAATTAATTTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10540.02 Da Isoelectric Point: 4.1364
>AT20126 WP_010873096.1 NC_000911:2085826-2086110 [Synechocystis sp. PCC 6803]
MGETLPQQLPNMNAVSQIIAQQKLAAIMEQVCSDHVPTIITRDTQPSVVMISLEDYQSLEETAYLLRSPNNAQKLMSAIK
QLENDQGVERELLE
MGETLPQQLPNMNAVSQIIAQQKLAAIMEQVCSDHVPTIITRDTQPSVVMISLEDYQSLEETAYLLRSPNNAQKLMSAIK
QLENDQGVERELLE
Download Length: 285 bp
>AT20126 NC_000911:2085826-2086110 [Synechocystis sp. PCC 6803]
ATGGGGGAAACTTTGCCCCAACAATTGCCAAACATGAACGCAGTCAGCCAAATTATTGCACAACAAAAACTTGCAGCTAT
CATGGAGCAAGTATGTAGTGATCATGTTCCAACAATTATCACCAGGGATACCCAACCATCTGTCGTCATGATTTCCCTGG
AAGACTATCAGTCATTAGAAGAAACAGCATATCTACTACGTAGCCCGAACAATGCTCAAAAATTGATGTCGGCGATCAAG
CAATTAGAAAATGATCAAGGTGTCGAAAGGGAACTATTGGAGTGA
ATGGGGGAAACTTTGCCCCAACAATTGCCAAACATGAACGCAGTCAGCCAAATTATTGCACAACAAAAACTTGCAGCTAT
CATGGAGCAAGTATGTAGTGATCATGTTCCAACAATTATCACCAGGGATACCCAACCATCTGTCGTCATGATTTCCCTGG
AAGACTATCAGTCATTAGAAGAAACAGCATATCTACTACGTAGCCCGAACAATGCTCAAAAATTGATGTCGGCGATCAAG
CAATTAGAAAATGATCAAGGTGTCGAAAGGGAACTATTGGAGTGA