Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2828075..2828346 | Replicon | chromosome |
| Accession | NZ_CP074031 | ||
| Organism | Escherichia coli strain PK12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2828113..2828215 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2828075..2828346 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU67_RS13620 | 2825232..2826671 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFU67_RS13625 | 2826789..2827025 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KFU67_RS13630 | 2827130..2827321 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KFU67_RS13635 | 2827322..2827978 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2828075..2828346 | + | 272 | - | - | Antitoxin |
| - | 2828113..2828215 | - | 103 | - | - | Toxin |
| KFU67_RS13640 | 2828374..2828715 | - | 342 | WP_000976484.1 | YebY family protein | - |
| KFU67_RS13645 | 2828728..2829600 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| KFU67_RS13650 | 2829604..2829978 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| KFU67_RS13655 | 2830117..2830347 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU67_RS13660 | 2830449..2831105 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU67_RS13665 | 2831129..2831791 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T201197 NZ_CP074031:c2828215-2828113 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201197 NZ_CP074031:2828075-2828346 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
