Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2558262..2558533 | Replicon | chromosome |
| Accession | NZ_CP074019 | ||
| Organism | Escherichia coli strain PM22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2558300..2558403 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2558262..2558533 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU87_RS12165 | 2555419..2556858 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFU87_RS12170 | 2556976..2557212 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KFU87_RS12175 | 2557317..2557508 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KFU87_RS12180 | 2557509..2558165 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2558262..2558533 | + | 272 | - | - | Antitoxin |
| - | 2558300..2558403 | - | 104 | - | - | Toxin |
| KFU87_RS12185 | 2558561..2558902 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KFU87_RS12190 | 2558915..2559787 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KFU87_RS12195 | 2559791..2560165 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| KFU87_RS12200 | 2560304..2560534 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU87_RS12205 | 2560636..2561292 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU87_RS12210 | 2561316..2561978 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201110 NZ_CP074019:c2558403-2558300 [Escherichia coli]
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201110 NZ_CP074019:2558262-2558533 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
