Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2047319..2047590 | Replicon | chromosome |
| Accession | NZ_CP074012 | ||
| Organism | Escherichia coli strain PI24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2047449..2047552 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2047319..2047590 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU81_RS10010 | 2043874..2044536 | - | 663 | WP_219371335.1 | exodeoxyribonuclease X | - |
| KFU81_RS10015 | 2044560..2045216 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU81_RS10020 | 2045318..2045548 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU81_RS10025 | 2045687..2046061 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU81_RS10030 | 2046065..2046937 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU81_RS10035 | 2046950..2047291 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2047319..2047590 | - | 272 | - | - | Antitoxin |
| - | 2047449..2047552 | + | 104 | - | - | Toxin |
| KFU81_RS10040 | 2047687..2048343 | + | 657 | WP_053885983.1 | protein-serine/threonine phosphatase | - |
| KFU81_RS10045 | 2048344..2048535 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU81_RS10050 | 2048640..2048876 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU81_RS10055 | 2048994..2050433 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201083 NZ_CP074012:2047449-2047552 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201083 NZ_CP074012:c2047590-2047319 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
