20103

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/-
Location 3777182..3777687 Replicon chromosome
Accession LT629788
Organism Pseudomonas moraviensis strain BS3668

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SAMN04490196_3508 Protein ID SDU59427.1
Coordinates 3777433..3777687 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag SAMN04490196_3507 Protein ID SDU59415.1
Coordinates 3777182..3777436 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAMN04490196_3502 3772863..3773192 + 330 SDU59359.1 hypothetical protein -
SAMN04490196_3503 3773211..3773579 - 369 SDU59370.1 PH domain-containing protein -
SAMN04490196_3504 3773744..3774115 + 372 SDU59381.1 hypothetical protein -
SAMN04490196_3505 3774208..3774960 + 753 SDU59393.1 hypothetical protein -
SAMN04490196_3506 3775031..3776950 + 1920 SDU59403.1 PhoD-like phosphatase -
SAMN04490196_3507 3777182..3777436 + 255 SDU59415.1 antitoxin YefM Antitoxin
SAMN04490196_3508 3777433..3777687 + 255 SDU59427.1 toxin YoeB Toxin
SAMN04490196_3509 3777681..3778868 - 1188 SDU59438.1 acetylornithine aminotransferase apoenzyme -
SAMN04490196_3510 3778971..3779891 + 921 SDU59452.1 DNA-binding transcriptional regulator, LysR family -
SAMN04490196_3511 3779931..3780335 + 405 SDU59463.1 Acetyltransferase (GNAT) domain-containing protein -
SAMN04490196_3512 3780469..3781170 + 702 SDU59474.1 hypothetical protein -
SAMN04490196_3513 3781427..3781918 - 492 SDU59485.1 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9953.50 Da        Isoelectric Point: 9.0627

>T20103 SDU59427.1 LT629788:3777433-3777687 [Pseudomonas moraviensis]
MKIDFTPTGWEDYLWFQQNDKAGLKRINLLIKAIKREPFEGVGKPEALKHNMSGLWSRRVTAEHRLVYRVEDGEICVISC
RYHY

Download         Length: 255 bp

>T20103 LT629788:3777433-3777687 [Pseudomonas moraviensis]
ATGAAAATCGACTTCACGCCCACAGGCTGGGAAGACTATTTGTGGTTTCAGCAAAACGACAAGGCTGGGCTCAAGCGCAT
CAATCTTCTGATCAAAGCAATCAAGCGCGAACCGTTTGAGGGTGTCGGTAAACCAGAGGCGCTCAAACATAATATGAGCG
GCCTCTGGTCACGCCGAGTAACGGCCGAACATCGTCTGGTGTACAGGGTTGAGGACGGCGAAATCTGCGTCATCAGTTGC
CGGTATCACTATTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9503.96 Da        Isoelectric Point: 7.0130

>AT20103 SDU59415.1 LT629788:3777182-3777436 [Pseudomonas moraviensis]
MQTINYTTARAHLAETMDRVNEDRAPLLVTRQKGEPVVMMSLAEYNALEETAYLLRSPANAERLMKSIGELRAGKAKVRQ
LIEE

Download         Length: 255 bp

>AT20103 LT629788:3777182-3777436 [Pseudomonas moraviensis]
ATGCAAACCATCAACTACACCACCGCCCGTGCGCATTTGGCCGAGACGATGGACCGTGTCAATGAAGATCGTGCGCCGCT
ATTGGTCACTCGGCAGAAAGGTGAACCAGTAGTGATGATGTCTTTGGCCGAATACAACGCATTGGAAGAAACAGCGTATT
TGCTTCGCTCCCCCGCCAACGCCGAACGGCTGATGAAATCCATCGGTGAGTTACGCGCCGGCAAAGCCAAAGTCAGGCAA
TTGATCGAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References