Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PP_4151-4152/- |
| Location | 3064563..3065602 | Replicon | chromosome |
| Accession | LT629788 | ||
| Organism | Pseudomonas moraviensis strain BS3668 | ||
Toxin (Protein)
| Gene name | PP_4152 | Uniprot ID | - |
| Locus tag | SAMN04490196_2839 | Protein ID | SDU52315.1 |
| Coordinates | 3065027..3065602 (+) | Length | 192 a.a. |
Antitoxin (Protein)
| Gene name | PP_4151 | Uniprot ID | - |
| Locus tag | SAMN04490196_2838 | Protein ID | SDU52305.1 |
| Coordinates | 3064563..3065030 (+) | Length | 156 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAMN04490196_2834 | 3060224..3061048 | + | 825 | SDU52259.1 | voltage-gated potassium channel | - |
| SAMN04490196_2835 | 3061224..3062222 | + | 999 | SDU52268.1 | sulfate transport system substrate-binding protein | - |
| SAMN04490196_2836 | 3062631..3063830 | + | 1200 | SDU52281.1 | Predicted arabinose efflux permease, MFS family | - |
| SAMN04490196_2837 | 3063943..3064347 | - | 405 | SDU52293.1 | Predicted nuclease of the RNAse H fold, HicB family | - |
| SAMN04490196_2838 | 3064563..3065030 | + | 468 | SDU52305.1 | DNA binding domain-containing protein, excisionase family | Antitoxin |
| SAMN04490196_2839 | 3065027..3065602 | + | 576 | SDU52315.1 | PIN domain-containing protein | Toxin |
| SAMN04490196_2840 | 3065647..3066051 | - | 405 | SDU52332.1 | hypothetical protein | - |
| SAMN04490196_2841 | 3066077..3067276 | - | 1200 | SDU52342.1 | cytochrome c-type biogenesis protein CcmH | - |
| SAMN04490196_2842 | 3067273..3067743 | - | 471 | SDU52357.1 | cytochrome c-type biogenesis protein CcmH | - |
| SAMN04490196_2843 | 3067740..3068276 | - | 537 | SDU52368.1 | cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE | - |
| SAMN04490196_2844 | 3068273..3070261 | - | 1989 | SDU52378.1 | cytochrome c-type biogenesis protein CcmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 192 a.a. Molecular weight: 21608.64 Da Isoelectric Point: 5.8606
>T20102 SDU52315.1 LT629788:3065027-3065602 [Pseudomonas moraviensis]
VRHSSFTAVYDACVLYPAPLRDFLMWLALSGLYRARWTQEIHHEWKRNLLKNRSDLTLEQLDRTSQLMDLAIPDACIDGY
EDLVSGLTLPDENDRHVLAAAIRCGADVIVTFNLKDFPSCHLAPYGIEAQHPDEFVENLFHLDSAAVVAAAQSQRRQLKT
PTVEVDKYLGFLQRQGLVESVKALGNYRAIL
VRHSSFTAVYDACVLYPAPLRDFLMWLALSGLYRARWTQEIHHEWKRNLLKNRSDLTLEQLDRTSQLMDLAIPDACIDGY
EDLVSGLTLPDENDRHVLAAAIRCGADVIVTFNLKDFPSCHLAPYGIEAQHPDEFVENLFHLDSAAVVAAAQSQRRQLKT
PTVEVDKYLGFLQRQGLVESVKALGNYRAIL
Download Length: 576 bp
>T20102 LT629788:3065027-3065602 [Pseudomonas moraviensis]
GTGAGGCATTCCTCTTTCACTGCTGTATACGATGCATGCGTCTTATATCCGGCCCCTTTGAGAGACTTCCTTATGTGGCT
CGCGTTGTCTGGGCTGTATCGAGCTCGCTGGACTCAGGAAATACACCACGAATGGAAGCGTAACTTATTGAAGAACAGGT
CCGACCTGACCCTCGAACAACTCGATCGCACATCGCAATTGATGGACCTGGCCATTCCAGATGCGTGTATCGATGGCTAT
GAAGACTTGGTGTCAGGCCTGACGCTGCCTGATGAGAACGACCGCCATGTTCTGGCGGCCGCTATCCGATGCGGTGCCGA
TGTAATAGTGACGTTCAACCTGAAAGATTTCCCCTCCTGTCACCTCGCGCCATATGGCATCGAAGCTCAACACCCGGATG
AGTTTGTGGAAAACCTTTTTCATCTTGATTCGGCTGCCGTCGTCGCTGCGGCTCAAAGCCAGCGACGGCAATTGAAAACG
CCCACTGTGGAGGTGGACAAATATCTTGGCTTTCTCCAGCGGCAAGGCTTGGTCGAATCGGTAAAGGCGTTAGGTAACTA
TCGAGCGATTCTCTGA
GTGAGGCATTCCTCTTTCACTGCTGTATACGATGCATGCGTCTTATATCCGGCCCCTTTGAGAGACTTCCTTATGTGGCT
CGCGTTGTCTGGGCTGTATCGAGCTCGCTGGACTCAGGAAATACACCACGAATGGAAGCGTAACTTATTGAAGAACAGGT
CCGACCTGACCCTCGAACAACTCGATCGCACATCGCAATTGATGGACCTGGCCATTCCAGATGCGTGTATCGATGGCTAT
GAAGACTTGGTGTCAGGCCTGACGCTGCCTGATGAGAACGACCGCCATGTTCTGGCGGCCGCTATCCGATGCGGTGCCGA
TGTAATAGTGACGTTCAACCTGAAAGATTTCCCCTCCTGTCACCTCGCGCCATATGGCATCGAAGCTCAACACCCGGATG
AGTTTGTGGAAAACCTTTTTCATCTTGATTCGGCTGCCGTCGTCGCTGCGGCTCAAAGCCAGCGACGGCAATTGAAAACG
CCCACTGTGGAGGTGGACAAATATCTTGGCTTTCTCCAGCGGCAAGGCTTGGTCGAATCGGTAAAGGCGTTAGGTAACTA
TCGAGCGATTCTCTGA
Antitoxin
Download Length: 156 a.a. Molecular weight: 17223.59 Da Isoelectric Point: 6.0020
>AT20102 SDU52305.1 LT629788:3064563-3065030 [Pseudomonas moraviensis]
MPTPIPSTTNLPVEREVKAAIEGQRTLTAFLATGFDTQRIQIFDEQNEAHSVELPTSALRLLSDILAALAEGNAVKVVPI
HAELTTQEAADLLNVSRPHMIKLLESGEISYHKTGKHRRVRFADLMEYKTRRDTASEQAMTLLAEQAQALRTGYE
MPTPIPSTTNLPVEREVKAAIEGQRTLTAFLATGFDTQRIQIFDEQNEAHSVELPTSALRLLSDILAALAEGNAVKVVPI
HAELTTQEAADLLNVSRPHMIKLLESGEISYHKTGKHRRVRFADLMEYKTRRDTASEQAMTLLAEQAQALRTGYE
Download Length: 468 bp
>AT20102 LT629788:3064563-3065030 [Pseudomonas moraviensis]
ATGCCCACTCCAATTCCTTCCACTACAAATTTGCCAGTTGAACGCGAAGTCAAAGCCGCGATTGAAGGCCAGCGCACCCT
CACCGCTTTCCTCGCCACAGGTTTCGATACCCAGCGAATCCAGATTTTTGATGAGCAGAATGAAGCCCACAGCGTCGAGC
TGCCAACGTCGGCATTGCGCTTGCTGAGCGATATCCTCGCAGCGCTGGCGGAGGGCAACGCTGTGAAGGTCGTGCCGATC
CATGCCGAGCTGACCACTCAAGAAGCTGCCGATCTGCTCAACGTCTCACGTCCGCACATGATCAAACTGCTGGAGAGCGG
TGAGATTTCCTACCACAAAACAGGCAAGCACCGACGTGTGCGTTTTGCCGATCTGATGGAATATAAAACCCGGCGAGACA
CCGCCAGCGAGCAGGCAATGACGCTTCTCGCGGAGCAGGCACAGGCGCTAAGGACAGGATACGAGTGA
ATGCCCACTCCAATTCCTTCCACTACAAATTTGCCAGTTGAACGCGAAGTCAAAGCCGCGATTGAAGGCCAGCGCACCCT
CACCGCTTTCCTCGCCACAGGTTTCGATACCCAGCGAATCCAGATTTTTGATGAGCAGAATGAAGCCCACAGCGTCGAGC
TGCCAACGTCGGCATTGCGCTTGCTGAGCGATATCCTCGCAGCGCTGGCGGAGGGCAACGCTGTGAAGGTCGTGCCGATC
CATGCCGAGCTGACCACTCAAGAAGCTGCCGATCTGCTCAACGTCTCACGTCCGCACATGATCAAACTGCTGGAGAGCGG
TGAGATTTCCTACCACAAAACAGGCAAGCACCGACGTGTGCGTTTTGCCGATCTGATGGAATATAAAACCCGGCGAGACA
CCGCCAGCGAGCAGGCAATGACGCTTCTCGCGGAGCAGGCACAGGCGCTAAGGACAGGATACGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|