20101

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 2606436..2606985 Replicon chromosome
Accession LT629788
Organism Pseudomonas moraviensis strain BS3668

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SAMN04490196_2422 Protein ID SDU47165.1
Coordinates 2606436..2606711 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag SAMN04490196_2423 Protein ID SDU47179.1
Coordinates 2606713..2606985 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAMN04490196_2417 2601995..2602684 + 690 SDU47097.1 hypothetical protein -
SAMN04490196_2418 2602689..2603876 + 1188 SDU47111.1 Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family -
SAMN04490196_2419 2603848..2604639 + 792 SDU47124.1 hypothetical protein -
SAMN04490196_2420 2604709..2605401 + 693 SDU47137.1 hypothetical protein -
SAMN04490196_2421 2605539..2606336 - 798 SDU47151.1 Methyltransferase domain-containing protein -
SAMN04490196_2422 2606436..2606711 - 276 SDU47165.1 Plasmid stabilization system protein ParE Toxin
SAMN04490196_2423 2606713..2606985 - 273 SDU47179.1 Predicted transcriptional regulator Antitoxin
SAMN04490196_2424 2607152..2608051 - 900 SDU47193.1 DNA-binding transcriptional regulator, LysR family -
SAMN04490196_2425 2608212..2609234 + 1023 SDU47208.1 Acetyl esterase/lipase -
SAMN04490196_2426 2609343..2610770 + 1428 SDU47223.1 Small-conductance mechanosensitive channel -
SAMN04490196_2427 2610982..2611605 - 624 SDU47235.1 Nicotinamidase-related amidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(10-47)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10701.38 Da        Isoelectric Point: 8.5043

>T20101 SDU47165.1 LT629788:c2606711-2606436 [Pseudomonas moraviensis]
MELKWTSKGLSDLTRLYEFLAAVNQPAAARTVQQLTAAPTMLLANPRLGERLEEFEPRDVRRILVGHYEMRYEIIGSTIY
LLRLWHTREER

Download         Length: 276 bp

>T20101 LT629788:c2606711-2606436 [Pseudomonas moraviensis]
ATGGAGTTGAAGTGGACAAGCAAAGGGCTTTCCGACCTGACCAGGCTTTACGAGTTTTTGGCAGCGGTCAATCAACCTGC
CGCTGCGCGCACTGTGCAACAGCTGACCGCCGCTCCGACAATGCTGTTGGCCAATCCGCGCTTGGGCGAACGCCTGGAAG
AATTTGAACCGCGAGACGTCCGAAGGATTCTGGTCGGGCACTACGAAATGCGCTACGAGATCATCGGTTCGACTATCTAC
CTGCTGCGCCTTTGGCACACTCGCGAAGAACGATAA

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10110.48 Da        Isoelectric Point: 5.6994

>AT20101 SDU47179.1 LT629788:c2606985-2606713 [Pseudomonas moraviensis]
MAATMKTRSVTAHVPVQLAEKVDLMAERLERSRNWIVKQALSAWIDQEEERSRLTREALADVDAGRVIDHQSVQAWADSL
TSDTPLKAPL

Download         Length: 273 bp

>AT20101 LT629788:c2606985-2606713 [Pseudomonas moraviensis]
ATGGCCGCGACAATGAAAACCCGATCCGTAACTGCCCATGTACCGGTGCAACTGGCCGAGAAGGTCGATCTGATGGCTGA
GCGTCTGGAGCGCTCGCGTAACTGGATCGTGAAACAGGCCCTGAGCGCCTGGATTGATCAAGAGGAAGAGCGCAGCCGTC
TGACGCGAGAAGCCTTGGCTGACGTCGACGCCGGGCGCGTCATCGATCATCAGTCAGTACAGGCATGGGCGGACAGCTTG
ACTTCCGATACACCTCTCAAGGCGCCCCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References