Detailed information of TA system TA020100

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/-
• Location: 1420196..1420649
• Replicon: chromosome
• Accession: LT629788
• Organism: Pseudomonas moraviensis strain BS3668

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: SAMN04490196_1411
• Protein ID: SDU29936.1
• Coordinates: 1420196..1420465 (-)
• Length: 90 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: SAMN04490196_1412
• Protein ID: SDU29960.1
• Coordinates: 1420455..1420649 (-)
• Length: 65 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
SAMN04490196_1411	1420196..1420465	-	270	SDU29936.1	addiction module toxin, RelE/StbE family	Toxin
SAMN04490196_1412	1420455..1420649	-	195	SDU29960.1	hypothetical protein	Antitoxin
SAMN04490196_1414	1421215..1421409	-	195	SDU29992.1	hypothetical protein	-
SAMN04490196_1415	1421639..1421857	-	219	SDU30012.1	hypothetical protein	-
SAMN04490196_1416	1421966..1423645	-	1680	SDU30033.1	Predicted arabinose efflux permease, MFS family	-
SAMN04490196_1417	1423824..1424591	-	768	SDU30057.1	phosphonate transport system permease protein	-
SAMN04490196_1418	1424588..1425415	-	828	SDU30077.1	phosphonate transport system permease protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-83)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 90 a.a.
• Molecular weight: 10126.77 Da
• Isoelectric Point: 10.6773

>T20100 SDU29936.1 LT629788:c1420465-1420196 [Pseudomonas moraviensis]
MPVNWSKPALGDLADIIEYVEQRNTVASVALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTDQINILT
VLHARKKYP

Nucleotide

• Length: 270 bp

>T20100 LT629788:c1420465-1420196 [Pseudomonas moraviensis]
CTGCCGGTTAACTGGAGCAAACCGGCTCTTGGAGATCTGGCTGACATCATCGAATACGTTGAACAACGCAACACTGTCGC
TTCAGTTGCACTGCACCAAAAGCTCAGCGCGGCAGCGCGAAGGCTTTCCTGGATTCCGCATGGTTTCCGCTCCGGCCGAA
TACCGGGCACTCGCGAAATGGTCATTAACTCGAATTATTTACTGGTCTATCGGGTGACAGACCAGATCAATATTCTGACC
GTATTGCACGCCCGTAAAAAATATCCATAA

Antitoxin

Protein

• Length: 65 a.a.
• Molecular weight: 7259.18 Da
• Isoelectric Point: 4.7361

>AT20100 SDU29960.1 LT629788:c1420649-1420455 [Pseudomonas moraviensis]
MSAELSLIVSDFETEEAAASYDRWYRAKVQAALDDPRPPVPHDEAMVLLGQMLEERRKNRRAAG

Nucleotide

• Length: 195 bp

>AT20100 LT629788:c1420649-1420455 [Pseudomonas moraviensis]
ATGAGCGCTGAACTTTCACTTATCGTTTCAGACTTCGAAACCGAAGAAGCGGCTGCGAGCTATGACCGTTGGTATCGGGC
CAAGGTACAAGCCGCACTTGATGATCCACGCCCGCCTGTTCCCCACGACGAGGCAATGGTGCTGCTAGGCCAGATGCTGG
AAGAGAGGCGCAAGAATCGACGCGCTGCCGGTTAA