Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 984134..984405 | Replicon | chromosome |
| Accession | NZ_CP073996 | ||
| Organism | Escherichia coli strain PM7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 984172..984275 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 984134..984405 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU86_RS04815 | 981291..982730 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFU86_RS04820 | 982848..983084 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KFU86_RS04825 | 983189..983380 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KFU86_RS04830 | 983381..984037 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 984134..984405 | + | 272 | - | - | Antitoxin |
| - | 984172..984275 | - | 104 | - | - | Toxin |
| KFU86_RS04835 | 984433..984774 | - | 342 | WP_000976492.1 | YebY family protein | - |
| KFU86_RS04840 | 984787..985659 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KFU86_RS04845 | 985663..986037 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KFU86_RS04850 | 986176..986406 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU86_RS04855 | 986508..987164 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU86_RS04860 | 987188..987850 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200987 NZ_CP073996:c984275-984172 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200987 NZ_CP073996:984134-984405 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
