Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947139..1947410 | Replicon | chromosome |
| Accession | NZ_CP073988 | ||
| Organism | Escherichia coli strain MB10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947269..1947372 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947139..1947410 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU65_RS09440 | 1943695..1944357 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU65_RS09445 | 1944381..1945037 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU65_RS09450 | 1945139..1945369 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU65_RS09455 | 1945508..1945882 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KFU65_RS09460 | 1945886..1946758 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| KFU65_RS09465 | 1946771..1947112 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1947139..1947410 | - | 272 | - | - | Antitoxin |
| - | 1947269..1947372 | + | 104 | - | - | Toxin |
| KFU65_RS09470 | 1947507..1948163 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KFU65_RS09475 | 1948164..1948355 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU65_RS09480 | 1948460..1948696 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU65_RS09485 | 1948814..1950253 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200941 NZ_CP073988:1947269-1947372 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200941 NZ_CP073988:c1947410-1947139 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
