Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 4115477..4116003 | Replicon | chromosome |
| Accession | NZ_CP073981 | ||
| Organism | Escherichia coli strain MB19 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | KFU84_RS19730 | Protein ID | WP_000323025.1 |
| Coordinates | 4115477..4115764 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | KFU84_RS19735 | Protein ID | WP_000534858.1 |
| Coordinates | 4115764..4116003 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU84_RS19695 (4110873) | 4110873..4111088 | - | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| KFU84_RS19700 (4111340) | 4111340..4111714 | - | 375 | WP_001348108.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| KFU84_RS19705 (4111886) | 4111886..4112146 | - | 261 | Protein_3829 | cell envelope integrity protein TolA | - |
| KFU84_RS19710 (4113359) | 4113359..4113901 | - | 543 | WP_000640161.1 | DUF1133 family protein | - |
| KFU84_RS19715 (4113898) | 4113898..4114187 | - | 290 | Protein_3831 | DUF1364 domain-containing protein | - |
| KFU84_RS19720 (4114187) | 4114187..4114786 | - | 600 | WP_130060266.1 | DUF1367 family protein | - |
| KFU84_RS19725 (4115250) | 4115250..4115405 | - | 156 | WP_096282653.1 | type I toxin-antitoxin system toxin HokD | - |
| KFU84_RS19730 (4115477) | 4115477..4115764 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| KFU84_RS19735 (4115764) | 4115764..4116003 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| KFU84_RS19740 (4116028) | 4116028..4116333 | + | 306 | WP_071593935.1 | protein YdfV | - |
| KFU84_RS19745 (4116536) | 4116536..4116868 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KFU84_RS19750 (4117305) | 4117305..4117454 | - | 150 | WP_011443592.1 | protein YdfW | - |
| KFU84_RS19755 (4117575) | 4117575..4118624 | - | 1050 | Protein_3839 | ISNCY family transposase | - |
| KFU84_RS19760 (4119526) | 4119526..4120005 | + | 480 | WP_250998285.1 | MFS transporter | - |
| KFU84_RS19765 (4119899) | 4119899..4120642 | + | 744 | WP_251988693.1 | MFS transporter | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4106388..4118645 | 12257 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T200906 WP_000323025.1 NZ_CP073981:c4115764-4115477 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T200906 NZ_CP098195:c4597338-4597165 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT200906 WP_000534858.1 NZ_CP073981:c4116003-4115764 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT200906 NZ_CP098195:c4597662-4597366 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|