Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2115031..2115302 | Replicon | chromosome |
| Accession | NZ_CP073946 | ||
| Organism | Escherichia coli strain MB51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2115161..2115264 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2115031..2115302 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU68_RS10330 | 2111586..2112248 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| KFU68_RS10335 | 2112272..2112928 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU68_RS10340 | 2113030..2113260 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU68_RS10345 | 2113399..2113773 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU68_RS10350 | 2113777..2114649 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KFU68_RS10355 | 2114662..2115003 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2115031..2115302 | - | 272 | - | - | Antitoxin |
| - | 2115161..2115264 | + | 104 | - | - | Toxin |
| KFU68_RS10360 | 2115399..2116055 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| KFU68_RS10365 | 2116056..2116247 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU68_RS10370 | 2116352..2116588 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU68_RS10375 | 2116706..2118145 | - | 1440 | WP_128424099.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2043044..2158257 | 115213 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200725 NZ_CP073946:2115161-2115264 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200725 NZ_CP073946:c2115302-2115031 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
