Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1948632..1948903 | Replicon | chromosome |
| Accession | NZ_CP073939 | ||
| Organism | Escherichia coli strain MB53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1948762..1948865 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1948632..1948903 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU83_RS09395 | 1945187..1945849 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU83_RS09400 | 1945873..1946529 | - | 657 | WP_257188356.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU83_RS09405 | 1946631..1946861 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU83_RS09410 | 1947000..1947374 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFU83_RS09415 | 1947378..1948250 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KFU83_RS09420 | 1948263..1948604 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1948632..1948903 | - | 272 | - | - | Antitoxin |
| - | 1948762..1948865 | + | 104 | - | - | Toxin |
| KFU83_RS09425 | 1949000..1949656 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| KFU83_RS09430 | 1949657..1949848 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU83_RS09435 | 1949953..1950189 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU83_RS09440 | 1950307..1951746 | - | 1440 | WP_040062830.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200671 NZ_CP073939:1948762-1948865 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200671 NZ_CP073939:c1948903-1948632 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
