Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2072507..2072778 | Replicon | chromosome |
| Accession | NZ_CP073924 | ||
| Organism | Escherichia coli strain MB165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072637..2072740 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2072507..2072778 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU71_RS10020 | 2069062..2069724 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFU71_RS10025 | 2069748..2070404 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFU71_RS10030 | 2070506..2070736 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFU71_RS10035 | 2070875..2071249 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KFU71_RS10040 | 2071253..2072125 | + | 873 | WP_257187652.1 | copper homeostasis membrane protein CopD | - |
| KFU71_RS10045 | 2072138..2072479 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2072507..2072778 | - | 272 | - | - | Antitoxin |
| - | 2072637..2072740 | + | 104 | - | - | Toxin |
| KFU71_RS10050 | 2072875..2073531 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| KFU71_RS10055 | 2073532..2073723 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFU71_RS10060 | 2073828..2074064 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFU71_RS10065 | 2074182..2075621 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200547 NZ_CP073924:2072637-2072740 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200547 NZ_CP073924:c2072778-2072507 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
