Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | mazEF/MazF(toxin) |
Location | 690497..691026 | Replicon | chromosome |
Accession | NZ_CP073895 | ||
Organism | Staphylococcus epidermidis strain V1937538 |
Toxin (Protein)
Gene name | mazF | Uniprot ID | Q5HME7 |
Locus tag | KFV38_RS03505 | Protein ID | WP_001829891.1 |
Coordinates | 690664..691026 (+) | Length | 121 a.a. |
Antitoxin (Protein)
Gene name | mazE | Uniprot ID | Q5HME6 |
Locus tag | KFV38_RS03500 | Protein ID | WP_001829931.1 |
Coordinates | 690497..690667 (+) | Length | 57 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KFV38_RS03475 (KFV38_03475) | 686322..686801 | + | 480 | WP_063278489.1 | PH domain-containing protein | - |
KFV38_RS03480 (KFV38_03480) | 686794..688299 | + | 1506 | WP_001829976.1 | PH domain-containing protein | - |
KFV38_RS03485 (KFV38_03485) | 688286..688795 | + | 510 | WP_001829888.1 | PH domain-containing protein | - |
KFV38_RS03490 (KFV38_03490) | 688843..689196 | + | 354 | WP_001829915.1 | holo-ACP synthase | - |
KFV38_RS03495 (KFV38_03495) | 689262..690410 | + | 1149 | WP_002468951.1 | alanine racemase | - |
KFV38_RS03500 (KFV38_03500) | 690497..690667 | + | 171 | WP_001829931.1 | type II toxin-antitoxin system antitoxin MazE | Antitoxin |
KFV38_RS03505 (KFV38_03505) | 690664..691026 | + | 363 | WP_001829891.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin |
KFV38_RS03510 (KFV38_03510) | 691372..692373 | + | 1002 | WP_001829902.1 | PP2C family protein-serine/threonine phosphatase | - |
KFV38_RS03515 (KFV38_03515) | 692473..692799 | + | 327 | WP_001829952.1 | anti-sigma factor antagonist | - |
KFV38_RS03520 (KFV38_03520) | 692801..693241 | + | 441 | WP_063278490.1 | anti-sigma B factor RsbW | - |
KFV38_RS03525 (KFV38_03525) | 693255..694025 | + | 771 | WP_002468952.1 | RNA polymerase sigma factor SigB | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 121 a.a. Molecular weight: 13497.65 Da Isoelectric Point: 9.9522
>T200478 WP_001829891.1 NZ_CP073895:690664-691026 [Staphylococcus epidermidis]
MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIR
TLDKKRLKEKLTFLSESKMIEVDNALDISLGLNNFDHHKS
MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIR
TLDKKRLKEKLTFLSESKMIEVDNALDISLGLNNFDHHKS
Download Length: 363 bp
>T200478 NZ_CP097882:2598325-2598432 [Escherichia coli str. K-12 substr. MG1655]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCGGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCGGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 57 a.a. Molecular weight: 6289.92 Da Isoelectric Point: 4.1920
>AT200478 WP_001829931.1 NZ_CP073895:690497-690667 [Staphylococcus epidermidis]
MLSFNQNRNHSLEQSLKEGYAQMADLNLSLATEAFPIECEACDCNESHLISNSKNE
MLSFNQNRNHSLEQSLKEGYAQMADLNLSLATEAFPIECEACDCNESHLISNSKNE
Download Length: 171 bp
>AT200478 NZ_CP097882:c2598278-2598212 [Escherichia coli str. K-12 substr. MG1655]
TGTCTGGTTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
TGTCTGGTTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2G7HWR0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0N1EF65 |