Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 680751..681260 Replicon chromosome
Accession NZ_CP073840
Organism Staphylococcus epidermidis strain B1264454

Toxin (Protein)


Gene name TsdT Uniprot ID Q5HMD5
Locus tag KFV39_RS03530 Protein ID WP_001829980.1
Coordinates 681051..681260 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID Q5HMD4
Locus tag KFV39_RS03525 Protein ID WP_001829893.1
Coordinates 680751..681044 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFV39_RS03500 (KFV39_03500) 675759..676547 + 789 WP_001829971.1 hydroxyethylthiazole kinase -
KFV39_RS03505 (KFV39_03505) 676553..677191 + 639 WP_002505076.1 thiamine phosphate synthase -
KFV39_RS03510 (KFV39_03510) 677280..678152 + 873 WP_002458703.1 membrane protein insertase YidC -
KFV39_RS03515 (KFV39_03515) 678258..678911 - 654 WP_001829983.1 HD domain-containing protein -
KFV39_RS03520 (KFV39_03520) 679093..680577 - 1485 WP_002457116.1 cardiolipin synthase -
KFV39_RS03525 (KFV39_03525) 680751..681044 + 294 WP_001829893.1 copper-sensing transcriptional repressor CsoR Antitoxin
KFV39_RS03530 (KFV39_03530) 681051..681260 + 210 WP_001829980.1 heavy-metal-associated domain-containing protein Toxin
KFV39_RS03535 (KFV39_03535) 681403..681540 + 138 WP_001829949.1 Lmo0850 family protein -
KFV39_RS03540 (KFV39_03540) 681640..682851 - 1212 WP_001829910.1 FtsW/RodA/SpoVE family cell cycle protein -
KFV39_RS03545 (KFV39_03545) 683242..684315 + 1074 WP_001832735.1 D-alanine--D-alanine ligase -
KFV39_RS03550 (KFV39_03550) 684327..685682 + 1356 WP_001832734.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Metal-sensitive transcriptional repressor

(4-95)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7987.24 Da        Isoelectric Point: 7.0080

>T200372 WP_001829980.1 NZ_CP073840:681051-681260 [Staphylococcus epidermidis]
MKLKKGLINVSGIKTTEQAKQLKDHLSKMIGINSVDIDYQMNEIRVEFDTPANLNNIEKEIYDYGFRIL

Download         Length: 210 bp

>T200372 NZ_CP097837:c1778007-1777900 [Shigella flexneri]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTGCCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11070.65 Da        Isoelectric Point: 5.5778

>AT200372 WP_001829893.1 NZ_CP073840:680751-681044 [Staphylococcus epidermidis]
MADMESAHHSEQIKTNLKSRLNRIEGQVRAINRMIDDDVYCDDVLTQIRATRSALNSVATKLLDHHMKGCIMEKINDGAQ
EEAMDELLVTFQKLIKD

Download         Length: 294 bp

>AT200372 NZ_CP097837:1778054-1778120 [Shigella flexneri]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G7HWU1

Antitoxin

Source ID Structure
AlphaFold DB A0A0N1EPA7

References