Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsdAT/- |
Location | 681980..682489 | Replicon | chromosome |
Accession | NZ_CP073836 | ||
Organism | Staphylococcus epidermidis strain B1262351 |
Toxin (Protein)
Gene name | TsdT | Uniprot ID | Q5HMD5 |
Locus tag | KFV42_RS03460 | Protein ID | WP_001829980.1 |
Coordinates | 682280..682489 (+) | Length | 70 a.a. |
Antitoxin (Protein)
Gene name | TsdA | Uniprot ID | Q5HMD4 |
Locus tag | KFV42_RS03455 | Protein ID | WP_001829893.1 |
Coordinates | 681980..682273 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KFV42_RS03430 (KFV42_03430) | 676988..677776 | + | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
KFV42_RS03435 (KFV42_03435) | 677782..678420 | + | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
KFV42_RS03440 (KFV42_03440) | 678509..679381 | + | 873 | WP_002458703.1 | membrane protein insertase YidC | - |
KFV42_RS03445 (KFV42_03445) | 679487..680140 | - | 654 | WP_001829983.1 | HD domain-containing protein | - |
KFV42_RS03450 (KFV42_03450) | 680322..681806 | - | 1485 | WP_002457116.1 | cardiolipin synthase | - |
KFV42_RS03455 (KFV42_03455) | 681980..682273 | + | 294 | WP_001829893.1 | copper-sensing transcriptional repressor CsoR | Antitoxin |
KFV42_RS03460 (KFV42_03460) | 682280..682489 | + | 210 | WP_001829980.1 | heavy-metal-associated domain-containing protein | Toxin |
KFV42_RS03465 (KFV42_03465) | 682632..682769 | + | 138 | WP_001829949.1 | Lmo0850 family protein | - |
KFV42_RS03470 (KFV42_03470) | 682869..684080 | - | 1212 | WP_001829910.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
KFV42_RS03475 (KFV42_03475) | 684471..685544 | + | 1074 | WP_001832735.1 | D-alanine--D-alanine ligase | - |
KFV42_RS03480 (KFV42_03480) | 685556..686911 | + | 1356 | WP_001832734.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 70 a.a. Molecular weight: 7987.24 Da Isoelectric Point: 7.0080
>T200367 WP_001829980.1 NZ_CP073836:682280-682489 [Staphylococcus epidermidis]
MKLKKGLINVSGIKTTEQAKQLKDHLSKMIGINSVDIDYQMNEIRVEFDTPANLNNIEKEIYDYGFRIL
MKLKKGLINVSGIKTTEQAKQLKDHLSKMIGINSVDIDYQMNEIRVEFDTPANLNNIEKEIYDYGFRIL
Download Length: 210 bp
>T200367 NZ_CP097836:213370-213768 [Shigella flexneri]
ATGCTGAAGTTTATTCTCGATACCAACATCTGCATTTTTACGATAAAGAACAAACCCGCCAGCGTCAGGGAGCGTTTTAA
CCTGAACCAGGGGAAAATGTGTATCAGTTCGGTCACCCTGATGGAGCTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AACGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGATGTTCTGGATTACGACGCTGCTGCAGCCACACACACC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGGCTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGGCGGCCTGAGAACTGAAGACTGGAGCTGA
ATGCTGAAGTTTATTCTCGATACCAACATCTGCATTTTTACGATAAAGAACAAACCCGCCAGCGTCAGGGAGCGTTTTAA
CCTGAACCAGGGGAAAATGTGTATCAGTTCGGTCACCCTGATGGAGCTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AACGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGATGTTCTGGATTACGACGCTGCTGCAGCCACACACACC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGGCTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGGCGGCCTGAGAACTGAAGACTGGAGCTGA
Antitoxin
Download Length: 98 a.a. Molecular weight: 11070.65 Da Isoelectric Point: 5.5778
>AT200367 WP_001829893.1 NZ_CP073836:681980-682273 [Staphylococcus epidermidis]
MADMESAHHSEQIKTNLKSRLNRIEGQVRAINRMIDDDVYCDDVLTQIRATRSALNSVATKLLDHHMKGCIMEKINDGAQ
EEAMDELLVTFQKLIKD
MADMESAHHSEQIKTNLKSRLNRIEGQVRAINRMIDDDVYCDDVLTQIRATRSALNSVATKLLDHHMKGCIMEKINDGAQ
EEAMDELLVTFQKLIKD
Download Length: 294 bp
>AT200367 NZ_CP097836:213143-213370 [Shigella flexneri]
ATGGAAACCACCGTATTTCTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTAATTGCTGTCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGGTTCGACGGAC
ACAGCGTCAGCACCGATTTTATGGATAACAGGGAACAGCCCGGCATGCAGGAAAGGGAGTCATTCTGA
ATGGAAACCACCGTATTTCTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTAATTGCTGTCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGGTTCGACGGAC
ACAGCGTCAGCACCGATTTTATGGATAACAGGGAACAGCCCGGCATGCAGGAAAGGGAGTCATTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2G7HWU1 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0N1EPA7 |