Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904832..1905103 | Replicon | chromosome |
| Accession | CP009789 | ||
| Organism | Escherichia coli K-12 strain ER3413 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904870..1904973 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904832..1905103 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER3413_1886 | 1901989..1903428 | + | 1440 | Protein_1723 | - | - |
| ER3413_1887 | 1903546..1903782 | + | 237 | AIZ51648.1 | hypothetical protein | - |
| ER3413_1889 | 1903887..1904078 | + | 192 | AIZ51650.1 | hypothetical protein | - |
| ER3413_1888 | 1904079..1904735 | - | 657 | AIZ51649.1 | serine/threonine-specific protein phosphatase 1 | - |
| - | 1904832..1905103 | + | 272 | - | - | Antitoxin |
| - | 1904870..1904973 | - | 104 | - | - | Toxin |
| ER3413_1890 | 1905131..1905472 | - | 342 | AIZ51652.1 | hypothetical protein | - |
| ER3413_1891 | 1905485..1906357 | - | 873 | AIZ51653.1 | inner membrane protein | - |
| ER3413_1892 | 1906361..1906735 | - | 375 | AIZ51654.1 | hypothetical protein | - |
| ER3413_1893 | 1906874..1907104 | + | 231 | AIZ51655.1 | DNA polymerase III, theta subunit | - |
| ER3413_1894 | 1907206..1907862 | + | 657 | AIZ51656.1 | hypothetical protein | - |
| ER3413_1896 | 1907886..1908548 | + | 663 | AIZ51658.1 | exodeoxyribonuclease 10; DNA exonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T20027 CP009789:c1904973-1904870 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT20027 CP009789:1904832-1905103 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
