Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2719962..2720163 | Replicon | chromosome |
| Accession | NZ_CP073771 | ||
| Organism | Enterobacter hormaechei strain SH19PTE2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2719967..2720070 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2719962..2720163 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFO54_RS13130 (KFO54_13130) | 2716222..2717670 | + | 1449 | WP_196368341.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFO54_RS13135 (KFO54_13135) | 2717777..2718016 | + | 240 | WP_003859885.1 | YebV family protein | - |
| KFO54_RS13140 (KFO54_13140) | 2718051..2718695 | - | 645 | WP_045329832.1 | protein-serine/threonine phosphatase | - |
| KFO54_RS13145 (KFO54_13145) | 2718863..2719843 | + | 981 | WP_110108499.1 | VirK/YbjX family protein | - |
| KFO54_RS13150 (KFO54_13150) | 2719889..2720086 | + | 198 | WP_110108500.1 | hypothetical protein | - |
| - | 2719962..2720163 | + | 202 | - | - | Antitoxin |
| - | 2719967..2720070 | - | 104 | - | - | Toxin |
| KFO54_RS13155 (KFO54_13155) | 2720212..2720550 | - | 339 | WP_003859787.1 | YebY family protein | - |
| KFO54_RS13160 (KFO54_13160) | 2720567..2721436 | - | 870 | WP_045341063.1 | copper homeostasis membrane protein CopD | - |
| KFO54_RS13165 (KFO54_13165) | 2721438..2721809 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| KFO54_RS13170 (KFO54_13170) | 2721947..2722177 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| KFO54_RS13175 (KFO54_13175) | 2722289..2722939 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| KFO54_RS13180 (KFO54_13180) | 2722964..2723626 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200209 NZ_CP073771:c2720070-2719967 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT200209 NZ_CP073771:2719962-2720163 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
