Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2058250..2058521 | Replicon | chromosome |
| Accession | NZ_CP073768 | ||
| Organism | Escherichia coli strain SH19PTE6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2058380..2058483 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2058250..2058521 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KEH54_RS09990 | 2054805..2055467 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| KEH54_RS09995 | 2055491..2056147 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KEH54_RS10000 | 2056249..2056479 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KEH54_RS10005 | 2056618..2056992 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KEH54_RS10010 | 2056996..2057868 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| KEH54_RS10015 | 2057881..2058222 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2058250..2058521 | - | 272 | - | - | Antitoxin |
| - | 2058380..2058483 | + | 104 | - | - | Toxin |
| KEH54_RS10020 | 2058618..2059274 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| KEH54_RS10025 | 2059275..2059466 | - | 192 | WP_001338167.1 | YebW family protein | - |
| KEH54_RS10030 | 2059571..2059807 | - | 237 | WP_001338166.1 | YebV family protein | - |
| KEH54_RS10035 | 2059925..2061364 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T200184 NZ_CP073768:2058380-2058483 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT200184 NZ_CP073768:c2058521-2058250 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
