Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2409435..2409961 | Replicon | chromosome |
| Accession | NZ_CP073624 | ||
| Organism | Escherichia coli strain AW1.7 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | KD735_RS11880 | Protein ID | WP_000323025.1 |
| Coordinates | 2409674..2409961 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | KD735_RS11875 | Protein ID | WP_000534858.1 |
| Coordinates | 2409435..2409674 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KD735_RS11855 (2405355) | 2405355..2407664 | - | 2310 | Protein_2310 | dimethyl sulfoxide reductase subunit A | - |
| KD735_RS11860 (2407718) | 2407718..2408686 | - | 969 | WP_077898063.1 | IS5 family transposase | - |
| KD735_RS11865 (2408717) | 2408717..2408902 | - | 186 | Protein_2312 | FlxA-like family protein | - |
| KD735_RS11870 (2409105) | 2409105..2409410 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KD735_RS11875 (2409435) | 2409435..2409674 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| KD735_RS11880 (2409674) | 2409674..2409961 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| KD735_RS11885 (2410033) | 2410033..2410188 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KD735_RS11890 (2410405) | 2410405..2410656 | + | 252 | WP_000980994.1 | protein Rem | - |
| KD735_RS11895 (2410723) | 2410723..2411001 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KD735_RS11900 (2411003) | 2411003..2412052 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KD735_RS11905 (2412066) | 2412066..2412818 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KD735_RS11910 (2413096) | 2413096..2413185 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KD735_RS11915 (2413240) | 2413240..2413452 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KD735_RS11920 (2413753) | 2413753..2413968 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KD735_RS11925 (2414332) | 2414332..2414502 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KD735_RS11930 (2414722) | 2414722..2414937 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2401387..2455569 | 54182 | |
| - | flank | IS/Tn | - | - | 2407718..2408641 | 923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T199922 WP_000323025.1 NZ_CP073624:2409674-2409961 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T199922 NZ_CP097660:315322-315690 [Klebsiella pneumoniae]
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT199922 WP_000534858.1 NZ_CP073624:2409435-2409674 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT199922 NZ_CP097660:315104-315325 [Klebsiella pneumoniae]
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|