Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2139988..2140259 | Replicon | chromosome |
| Accession | NZ_CP073624 | ||
| Organism | Escherichia coli strain AW1.7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2140118..2140221 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2139988..2140259 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KD735_RS10505 | 2136543..2137205 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KD735_RS10510 | 2137229..2137885 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KD735_RS10515 | 2137987..2138217 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KD735_RS10520 | 2138356..2138730 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| KD735_RS10525 | 2138734..2139606 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| KD735_RS10530 | 2139619..2139960 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2139988..2140259 | - | 272 | - | - | Antitoxin |
| - | 2140118..2140221 | + | 104 | - | - | Toxin |
| KD735_RS10535 | 2140356..2141012 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| KD735_RS10540 | 2141013..2141204 | - | 192 | WP_001313035.1 | YebW family protein | - |
| KD735_RS10545 | 2141309..2141545 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KD735_RS10550 | 2141663..2143102 | - | 1440 | WP_054626428.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199914 NZ_CP073624:2140118-2140221 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199914 NZ_CP073624:c2140259-2139988 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
