Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1117309..1117580 | Replicon | chromosome |
| Accession | NZ_CP073589 | ||
| Organism | Escherichia coli strain MFDS1006657 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1117347..1117450 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1117309..1117580 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KD154_RS05560 | 1114466..1115905 | + | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KD154_RS05565 | 1116023..1116259 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KD154_RS05570 | 1116364..1116555 | + | 192 | WP_001338167.1 | YebW family protein | - |
| KD154_RS05575 | 1116556..1117212 | - | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| - | 1117309..1117580 | + | 272 | - | - | Antitoxin |
| - | 1117347..1117450 | - | 104 | - | - | Toxin |
| KD154_RS05580 | 1117608..1117949 | - | 342 | WP_000976492.1 | YebY family protein | - |
| KD154_RS05585 | 1117962..1118834 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KD154_RS05590 | 1118838..1119212 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KD154_RS05595 | 1119351..1119581 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KD154_RS05600 | 1119683..1120339 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KD154_RS05605 | 1120363..1121025 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199849 NZ_CP073589:c1117450-1117347 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199849 NZ_CP073589:1117309-1117580 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
