Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2072104..2072375 | Replicon | chromosome |
| Accession | NZ_CP073360 | ||
| Organism | Escherichia coli strain EC11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072234..2072337 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2072104..2072375 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KDN44_RS09850 | 2068659..2069321 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KDN44_RS09855 | 2069345..2070001 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KDN44_RS09860 | 2070103..2070333 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KDN44_RS09865 | 2070472..2070846 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KDN44_RS09870 | 2070850..2071722 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KDN44_RS09875 | 2071735..2072076 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2072104..2072375 | - | 272 | - | - | Antitoxin |
| - | 2072234..2072337 | + | 104 | - | - | Toxin |
| KDN44_RS09880 | 2072472..2073128 | + | 657 | WP_024258105.1 | protein-serine/threonine phosphatase | - |
| KDN44_RS09885 | 2073129..2073320 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KDN44_RS09890 | 2073425..2073661 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KDN44_RS09895 | 2073779..2075218 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199758 NZ_CP073360:2072234-2072337 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199758 NZ_CP073360:c2072375-2072104 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
