Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 191031..191182 | Replicon | chromosome |
| Accession | NZ_CP073310 | ||
| Organism | Enterobacter cloacae strain CZ862 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 191066..191169 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 191031..191182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KDU74_RS00980 (KDU74_00980) | 187515..188177 | - | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
| KDU74_RS00985 (KDU74_00985) | 188201..188851 | - | 651 | WP_038419917.1 | carbon-nitrogen hydrolase family protein | - |
| KDU74_RS00990 (KDU74_00990) | 188961..189191 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| KDU74_RS00995 (KDU74_00995) | 189329..189700 | + | 372 | WP_178327596.1 | CopC domain-containing protein YobA | - |
| KDU74_RS01000 (KDU74_01000) | 189702..190571 | + | 870 | WP_130626250.1 | copper homeostasis membrane protein CopD | - |
| KDU74_RS01005 (KDU74_01005) | 190588..190926 | + | 339 | WP_013096105.1 | YebY family protein | - |
| - | 191031..191182 | - | 152 | - | - | Antitoxin |
| - | 191066..191169 | + | 104 | - | - | Toxin |
| KDU74_RS01010 (KDU74_01010) | 191333..192274 | - | 942 | WP_178327595.1 | VirK/YbjX family protein | - |
| KDU74_RS01015 (KDU74_01015) | 192441..193085 | + | 645 | WP_178327594.1 | protein-serine/threonine phosphatase | - |
| KDU74_RS01020 (KDU74_01020) | 193119..193358 | - | 240 | WP_013096113.1 | YebV family protein | - |
| KDU74_RS01025 (KDU74_01025) | 193464..194906 | - | 1443 | WP_029882304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199692 NZ_CP073310:191066-191169 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT199692 NZ_CP073310:c191182-191031 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
