Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1776095..1776263 | Replicon | chromosome |
| Accession | NZ_CP073236 | ||
| Organism | Klebsiella pasteurii strain Sb-24 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1776102..1776205 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1776095..1776263 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KCG39_RS08330 (KCG39_08330) | 1771369..1771887 | + | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
| KCG39_RS08335 (KCG39_08335) | 1771906..1772670 | + | 765 | WP_142468186.1 | molecular chaperone | - |
| KCG39_RS08340 (KCG39_08340) | 1772673..1775003 | + | 2331 | WP_142468187.1 | fimbria/pilus outer membrane usher protein | - |
| KCG39_RS08345 (KCG39_08345) | 1775018..1775977 | + | 960 | WP_049114593.1 | spore coat protein U domain-containing protein | - |
| - | 1776095..1776263 | + | 169 | - | - | Antitoxin |
| - | 1776102..1776205 | - | 104 | - | - | Toxin |
| KCG39_RS08350 (KCG39_08350) | 1776362..1776700 | - | 339 | WP_004122026.1 | YebY family protein | - |
| KCG39_RS08355 (KCG39_08355) | 1776717..1777586 | - | 870 | WP_004122027.1 | copper homeostasis membrane protein CopD | - |
| KCG39_RS08360 (KCG39_08360) | 1777591..1777965 | - | 375 | WP_004122028.1 | CopC domain-containing protein YobA | - |
| KCG39_RS08365 (KCG39_08365) | 1778101..1778331 | + | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| KCG39_RS08370 (KCG39_08370) | 1778410..1779069 | + | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| KCG39_RS08375 (KCG39_08375) | 1779076..1781136 | - | 2061 | WP_087828998.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199592 NZ_CP073236:c1776205-1776102 [Klebsiella pasteurii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT199592 NZ_CP073236:1776095-1776263 [Klebsiella pasteurii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
