Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070437..2070582 | Replicon | chromosome |
| Accession | NZ_CP072996 | ||
| Organism | Klebsiella pneumoniae strain KP1878 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070473..2070575 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070437..2070582 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KA532_RS10175 (KA532_10175) | 2065567..2067627 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KA532_RS10180 (KA532_10180) | 2067631..2068290 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KA532_RS10185 (KA532_10185) | 2068369..2068599 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KA532_RS10190 (KA532_10190) | 2068712..2069086 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KA532_RS10195 (KA532_10195) | 2069090..2069959 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| KA532_RS10200 (KA532_10200) | 2069976..2070314 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2070437..2070582 | - | 146 | - | - | Antitoxin |
| - | 2070473..2070575 | + | 103 | - | - | Toxin |
| KA532_RS10205 (KA532_10205) | 2070950..2071093 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KA532_RS10210 (KA532_10210) | 2071198..2072166 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KA532_RS10215 (KA532_10215) | 2072323..2072976 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KA532_RS10220 (KA532_10220) | 2072973..2073164 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KA532_RS10225 (KA532_10225) | 2073262..2073501 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KA532_RS10230 (KA532_10230) | 2073617..2075050 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T199437 NZ_CP072996:2070473-2070575 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT199437 NZ_CP072996:c2070582-2070437 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
