Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YoeB-YefM |
Location | 3066905..3067410 | Replicon | chromosome |
Accession | NZ_CP072990 | ||
Organism | Xanthomonas translucens pv. translucens strain CIX95 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A1C3TRG2 |
Locus tag | KBV71_RS13090 | Protein ID | WP_003479798.1 |
Coordinates | 3067153..3067410 (+) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | relE | Uniprot ID | A0A1C3TRJ9 |
Locus tag | KBV71_RS13085 | Protein ID | WP_003468816.1 |
Coordinates | 3066905..3067156 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KBV71_RS13060 (KBV71_12945) | 3061976..3063211 | + | 1236 | WP_065899003.1 | citrate synthase family protein | - |
KBV71_RS13065 | 3063913..3064932 | + | 1020 | WP_229017866.1 | hypothetical protein | - |
KBV71_RS13070 (KBV71_12955) | 3064968..3065411 | - | 444 | WP_003479801.1 | nuclear transport factor 2 family protein | - |
KBV71_RS13075 (KBV71_12960) | 3065533..3066255 | + | 723 | WP_003479800.1 | helix-turn-helix transcriptional regulator | - |
KBV71_RS13080 (KBV71_12965) | 3066252..3066796 | - | 545 | Protein_2584 | endonuclease | - |
KBV71_RS13085 (KBV71_12970) | 3066905..3067156 | + | 252 | WP_003468816.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
KBV71_RS13090 (KBV71_12975) | 3067153..3067410 | + | 258 | WP_003479798.1 | Txe/YoeB family addiction module toxin | Toxin |
KBV71_RS13100 (KBV71_12985) | 3068045..3068398 | - | 354 | WP_003479797.1 | PilZ domain-containing protein | - |
KBV71_RS13105 (KBV71_12990) | 3068395..3069372 | - | 978 | WP_003479796.1 | DNA polymerase III subunit delta' | - |
KBV71_RS13110 (KBV71_12995) | 3069369..3070037 | - | 669 | WP_003479795.1 | dTMP kinase | - |
KBV71_RS13115 (KBV71_13000) | 3070034..3071101 | - | 1068 | WP_242786205.1 | endolytic transglycosylase MltG | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 10156.61 Da Isoelectric Point: 9.7381
>T199430 WP_003479798.1 NZ_CP072990:3067153-3067410 [Xanthomonas translucens pv. translucens]
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGVLLIAQV
RYHYA
VTLQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPERLRHALAGYWSRRINDEHRIVYKVEAGVLLIAQV
RYHYA
Download Length: 258 bp
>T199430 NZ_CP097340:c75794-75366 [Mannheimia haemolytica]
ATGTATCGCTACCTTTTTGATACCAATATAGTTTCCGAGCTTTATAAGTTAAGAAATGACAAGATGGATGTCAATGTTCG
CCAGTGGCTGAGAGGGGTTAATCCTAGCCAGACCAATATCAGCTGTATTACGTTATCTGAAATCAAAACAGGTATTTTGC
TGAAAGCCCGCAAAGACAAAGAACAATCAGACCGATTAAATGATTGGTTTGAAAATAATGTATTAAAGGCTTATCAAACA
AAAGCGTTTGTGGTGAATAACGACATTGCTCTATTGGCATCAGAGTACCATATTCCCAATAAAATGGATTTAAATGATGC
TTATATTGCGGCAACCGCCAAATACCACAATCTGATTTTAGTCACCCGCAACACCAAAGATTTTATCCGTTGTGATGTGC
GTTTATTTAACCCATTTGAAACCGCATAA
ATGTATCGCTACCTTTTTGATACCAATATAGTTTCCGAGCTTTATAAGTTAAGAAATGACAAGATGGATGTCAATGTTCG
CCAGTGGCTGAGAGGGGTTAATCCTAGCCAGACCAATATCAGCTGTATTACGTTATCTGAAATCAAAACAGGTATTTTGC
TGAAAGCCCGCAAAGACAAAGAACAATCAGACCGATTAAATGATTGGTTTGAAAATAATGTATTAAAGGCTTATCAAACA
AAAGCGTTTGTGGTGAATAACGACATTGCTCTATTGGCATCAGAGTACCATATTCCCAATAAAATGGATTTAAATGATGC
TTATATTGCGGCAACCGCCAAATACCACAATCTGATTTTAGTCACCCGCAACACCAAAGATTTTATCCGTTGTGATGTGC
GTTTATTTAACCCATTTGAAACCGCATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9281.56 Da Isoelectric Point: 5.1186
>AT199430 WP_003468816.1 NZ_CP072990:3066905-3067156 [Xanthomonas translucens pv. translucens]
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETAYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE
Download Length: 252 bp
>AT199430 NZ_CP097340:c76081-75794 [Mannheimia haemolytica]
ATGGCAATAACCATTACTTCCAGAGAATTTAATCAAAATGCCAGCAAAGTGTTAAAAATGGCAGAAAAAGAGCCGGTTTT
TATTACCAAATGGGGCAAAATCGTCAATGTGGTGTCTAGTTATATGGATTATCAGCAGAAAAAGCCTAGCGAGCCAAGCT
TTGAAGAGCTATTCGCCTCTTCCGAAAATGAGGATGTGAGCGATGAATTTTGGCAAGAGTTTGAACAAACATTGGTTGAA
ATCCGCAAAAGCAATAAACCAAGACCTGTTGATTTTGGAGATGAGTAA
ATGGCAATAACCATTACTTCCAGAGAATTTAATCAAAATGCCAGCAAAGTGTTAAAAATGGCAGAAAAAGAGCCGGTTTT
TATTACCAAATGGGGCAAAATCGTCAATGTGGTGTCTAGTTATATGGATTATCAGCAGAAAAAGCCTAGCGAGCCAAGCT
TTGAAGAGCTATTCGCCTCTTCCGAAAATGAGGATGTGAGCGATGAATTTTGGCAAGAGTTTGAACAAACATTGGTTGAA
ATCCGCAAAAGCAATAAACCAAGACCTGTTGATTTTGGAGATGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1C3TRG2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1C3TRJ9 |