Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1961324..1961595 | Replicon | chromosome |
| Accession | NZ_CP072986 | ||
| Organism | Escherichia coli strain T159A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1961454..1961557 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1961324..1961595 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KBW97_RS09320 | 1957879..1958541 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KBW97_RS09325 | 1958565..1959221 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KBW97_RS09330 | 1959323..1959553 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KBW97_RS09335 | 1959692..1960066 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KBW97_RS09340 | 1960070..1960942 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KBW97_RS09345 | 1960955..1961296 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1961324..1961595 | - | 272 | - | - | Antitoxin |
| - | 1961454..1961557 | + | 104 | - | - | Toxin |
| KBW97_RS09350 | 1961692..1962348 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KBW97_RS09355 | 1962349..1962540 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KBW97_RS09360 | 1962645..1962881 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KBW97_RS09365 | 1962999..1964438 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199405 NZ_CP072986:1961454-1961557 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199405 NZ_CP072986:c1961595-1961324 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
