Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4140237..4140508 | Replicon | chromosome |
| Accession | NZ_CP072976 | ||
| Organism | Escherichia coli strain EC2341 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4140367..4140470 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4140237..4140508 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KBW65_RS19845 | 4136792..4137454 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KBW65_RS19850 | 4137478..4138134 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KBW65_RS19855 | 4138236..4138466 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KBW65_RS19860 | 4138605..4138979 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KBW65_RS19865 | 4138983..4139855 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KBW65_RS19870 | 4139868..4140209 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4140237..4140508 | - | 272 | - | - | Antitoxin |
| - | 4140367..4140470 | + | 104 | - | - | Toxin |
| KBW65_RS19875 | 4140605..4141261 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KBW65_RS19880 | 4141262..4141453 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KBW65_RS19885 | 4141558..4141794 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KBW65_RS19890 | 4141912..4143351 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199340 NZ_CP072976:4140367-4140470 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199340 NZ_CP072976:c4140508-4140237 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
