Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1844188..1844387 | Replicon | chromosome |
| Accession | NZ_CP072970 | ||
| Organism | Enterobacter sp. BWH 37 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1844281..1844384 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1844188..1844387 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBG18_RS08940 | 1840725..1841387 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| IBG18_RS08945 | 1841412..1842062 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| IBG18_RS08950 | 1842174..1842404 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IBG18_RS08955 | 1842542..1842913 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| IBG18_RS08960 | 1842915..1843784 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| IBG18_RS08965 | 1843801..1844139 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 1844188..1844387 | - | 200 | - | - | Antitoxin |
| IBG18_RS08970 | 1844265..1844462 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1844281..1844384 | + | 104 | - | - | Toxin |
| IBG18_RS08975 | 1844508..1845488 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| IBG18_RS08980 | 1845656..1846300 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| IBG18_RS08985 | 1846335..1846574 | - | 240 | WP_003859885.1 | YebV family protein | - |
| IBG18_RS08990 | 1846681..1848129 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199315 NZ_CP072970:1844281-1844384 [Enterobacter sp. BWH 37]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT199315 NZ_CP072970:c1844387-1844188 [Enterobacter sp. BWH 37]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
