Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2841012..2841211 | Replicon | chromosome |
| Accession | NZ_CP072961 | ||
| Organism | Enterobacter sp. MGH 14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2841015..2841118 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2841012..2841211 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBG17_RS13830 | 2837276..2838718 | + | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IBG17_RS13835 | 2838825..2839064 | + | 240 | WP_003859885.1 | YebV family protein | - |
| IBG17_RS13840 | 2839099..2839743 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| IBG17_RS13845 | 2839911..2840891 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| IBG17_RS13850 | 2840937..2841134 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2841012..2841211 | + | 200 | - | - | Antitoxin |
| - | 2841015..2841118 | - | 104 | - | - | Toxin |
| IBG17_RS13855 | 2841260..2841598 | - | 339 | WP_003859787.1 | YebY family protein | - |
| IBG17_RS13860 | 2841615..2842484 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| IBG17_RS13865 | 2842486..2842857 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| IBG17_RS13870 | 2842995..2843225 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IBG17_RS13875 | 2843337..2843987 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| IBG17_RS13880 | 2844012..2844674 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199298 NZ_CP072961:c2841118-2841015 [Enterobacter sp. MGH 14]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT199298 NZ_CP072961:2841012-2841211 [Enterobacter sp. MGH 14]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
