Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2841013..2841212 | Replicon | chromosome |
| Accession | NZ_CP072953 | ||
| Organism | Enterobacter sp. MGH 3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2841016..2841119 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2841013..2841212 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBG19_RS13830 | 2837277..2838719 | + | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IBG19_RS13835 | 2838826..2839065 | + | 240 | WP_003859885.1 | YebV family protein | - |
| IBG19_RS13840 | 2839100..2839744 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| IBG19_RS13845 | 2839912..2840892 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| IBG19_RS13850 | 2840938..2841135 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2841013..2841212 | + | 200 | - | - | Antitoxin |
| - | 2841016..2841119 | - | 104 | - | - | Toxin |
| IBG19_RS13855 | 2841261..2841599 | - | 339 | WP_003859787.1 | YebY family protein | - |
| IBG19_RS13860 | 2841616..2842485 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| IBG19_RS13865 | 2842487..2842858 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| IBG19_RS13870 | 2842996..2843226 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IBG19_RS13875 | 2843338..2843988 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| IBG19_RS13880 | 2844013..2844675 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199281 NZ_CP072953:c2841119-2841016 [Enterobacter sp. MGH 3]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT199281 NZ_CP072953:2841013-2841212 [Enterobacter sp. MGH 3]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
