Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2875528..2875727 | Replicon | chromosome |
| Accession | NZ_CP072945 | ||
| Organism | Enterobacter sp. MGH 7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2875531..2875634 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2875528..2875727 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAU58_RS13865 | 2871786..2873234 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IAU58_RS13870 | 2873341..2873580 | + | 240 | WP_003859885.1 | YebV family protein | - |
| IAU58_RS13875 | 2873615..2874259 | - | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| IAU58_RS13880 | 2874427..2875407 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| IAU58_RS13885 | 2875453..2875650 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2875528..2875727 | + | 200 | - | - | Antitoxin |
| - | 2875531..2875634 | - | 104 | - | - | Toxin |
| IAU58_RS13890 | 2875776..2876114 | - | 339 | WP_032609509.1 | YebY family protein | - |
| IAU58_RS13895 | 2876131..2877000 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| IAU58_RS13900 | 2877002..2877373 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| IAU58_RS13905 | 2877511..2877741 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| IAU58_RS13910 | 2877853..2878503 | + | 651 | WP_032609512.1 | carbon-nitrogen hydrolase family protein | - |
| IAU58_RS13915 | 2878528..2879190 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199241 NZ_CP072945:c2875634-2875531 [Enterobacter sp. MGH 7]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT199241 NZ_CP072945:2875528-2875727 [Enterobacter sp. MGH 7]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
