Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2134993..2135138 | Replicon | chromosome |
| Accession | NZ_CP072914 | ||
| Organism | Klebsiella oxytoca isolate KoPF10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2135028..2135131 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2134993..2135138 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAT64_RS10010 (KAT64_10010) | 2130097..2132157 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| KAT64_RS10015 (KAT64_10015) | 2132164..2132823 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| KAT64_RS10020 (KAT64_10020) | 2132902..2133132 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| KAT64_RS10025 (KAT64_10025) | 2133268..2133642 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| KAT64_RS10030 (KAT64_10030) | 2133647..2134516 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| KAT64_RS10035 (KAT64_10035) | 2134533..2134871 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2134993..2135138 | - | 146 | - | - | Antitoxin |
| - | 2135028..2135131 | + | 104 | - | - | Toxin |
| KAT64_RS10040 (KAT64_10040) | 2135258..2136217 | - | 960 | WP_004113762.1 | spore coat protein U domain-containing protein | - |
| KAT64_RS10045 (KAT64_10045) | 2136229..2138562 | - | 2334 | WP_070556957.1 | fimbria/pilus outer membrane usher protein | - |
| KAT64_RS10050 (KAT64_10050) | 2138565..2139272 | - | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| KAT64_RS10055 (KAT64_10055) | 2139347..2139865 | - | 519 | WP_070557030.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199203 NZ_CP072914:2135028-2135131 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT199203 NZ_CP072914:c2135138-2134993 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
