Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 84295..84440 | Replicon | chromosome |
| Accession | NZ_CP072905 | ||
| Organism | Klebsiella pneumoniae strain COL17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 84331..84433 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 84295..84440 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQ627_RS00425 | 79425..81485 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| GQ627_RS00430 | 81489..82148 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| GQ627_RS00435 | 82227..82457 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GQ627_RS00440 | 82570..82944 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| GQ627_RS00445 | 82948..83817 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| GQ627_RS00450 | 83834..84172 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 84295..84440 | - | 146 | - | - | Antitoxin |
| - | 84331..84433 | + | 103 | - | - | Toxin |
| GQ627_RS00455 | 84809..84952 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| GQ627_RS00460 | 85057..86025 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| GQ627_RS00465 | 86182..86835 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| GQ627_RS00470 | 86832..87023 | - | 192 | WP_002911395.1 | YebW family protein | - |
| GQ627_RS00475 | 87121..87360 | - | 240 | WP_002911393.1 | YebV family protein | - |
| GQ627_RS00480 | 87476..88909 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T199169 NZ_CP072905:84331-84433 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT199169 NZ_CP072905:c84440-84295 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
