Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2043241..2043512 | Replicon | chromosome |
| Accession | NZ_CP072858 | ||
| Organism | Escherichia coli strain 184/2aE | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2043371..2043474 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2043241..2043512 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9158_RS09785 | 2039796..2040458 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J9158_RS09790 | 2040482..2041138 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J9158_RS09795 | 2041240..2041470 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J9158_RS09800 | 2041609..2041983 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J9158_RS09805 | 2041987..2042859 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| J9158_RS09810 | 2042872..2043213 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2043241..2043512 | - | 272 | - | - | Antitoxin |
| - | 2043371..2043474 | + | 104 | - | - | Toxin |
| J9158_RS09815 | 2043609..2044265 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| J9158_RS09820 | 2044266..2044457 | - | 192 | WP_000457842.1 | YebW family protein | - |
| J9158_RS09825 | 2044562..2044798 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J9158_RS09830 | 2044916..2046355 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T199031 NZ_CP072858:2043371-2043474 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT199031 NZ_CP072858:c2043512-2043241 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
