Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2323665..2323810 | Replicon | chromosome |
| Accession | NZ_CP072825 | ||
| Organism | Klebsiella pneumoniae strain IRQBAS103c | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2323701..2323803 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2323665..2323810 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9262_RS11295 | 2318795..2320855 | + | 2061 | WP_130947155.1 | oligopeptidase B | - |
| J9262_RS11300 | 2320859..2321518 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J9262_RS11305 | 2321597..2321827 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J9262_RS11310 | 2321940..2322314 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J9262_RS11315 | 2322318..2323187 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| J9262_RS11320 | 2323204..2323542 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2323665..2323810 | - | 146 | - | - | Antitoxin |
| - | 2323701..2323803 | + | 103 | - | - | Toxin |
| J9262_RS11325 | 2324178..2324321 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| J9262_RS11330 | 2324426..2325394 | - | 969 | WP_206552288.1 | VirK/YbjX family protein | - |
| J9262_RS11335 | 2325551..2326204 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| J9262_RS11340 | 2326201..2326392 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J9262_RS11345 | 2326490..2326729 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J9262_RS11350 | 2326845..2328278 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T198925 NZ_CP072825:2323701-2323803 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT198925 NZ_CP072825:c2323810-2323665 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
