Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 301963..302234 | Replicon | chromosome |
| Accession | NZ_CP072802 | ||
| Organism | Escherichia coli strain PK5074 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 302093..302196 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 301963..302234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8617_RS01455 | 298518..299180 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| J8617_RS01460 | 299204..299860 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J8617_RS01465 | 299962..300192 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J8617_RS01470 | 300331..300705 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J8617_RS01475 | 300709..301581 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| J8617_RS01480 | 301594..301935 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 301963..302234 | - | 272 | - | - | Antitoxin |
| - | 302093..302196 | + | 104 | - | - | Toxin |
| J8617_RS01485 | 302331..302987 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| J8617_RS01490 | 302988..303179 | - | 192 | WP_001338167.1 | YebW family protein | - |
| J8617_RS01495 | 303284..303520 | - | 237 | WP_001338166.1 | YebV family protein | - |
| J8617_RS01500 | 303638..305077 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T198893 NZ_CP072802:302093-302196 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT198893 NZ_CP072802:c302234-301963 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
